Candidatus Pantoea carbekii US: BMSBPS_0641
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Entry
BMSBPS_0641 CDS
T03853
Name
(GenBank) RNA polymerase sigma subunit RpoS (sigma-38)
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pck
Candidatus Pantoea carbekii US
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pck03021
]
BMSBPS_0641
Transcription machinery [BR:
pck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BMSBPS_0641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
BTV_NS2
Motif
Other DBs
NCBI-ProteinID:
AKC32424
UniProt:
U3U7D9
LinkDB
All DBs
Position
902766..903758
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AA seq
330 aa
AA seq
DB search
MNHNKPEINKLKVDSEFDENGSEVFDEEVIVENEPVDNELAEDELLSQGITQCVLDATQL
YLAEIGYSPLLTAEEEVLFARRALRGDIASRRRMIESNLRLVVKIARRYSNRGLALLDLI
EEGNLGLIRTVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR
TARELSHKLDHEPSAEEIAQQLYKPVDDVSRMLCLNERITSVDTPLCGDSEKALLDVLAD
DKDNGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEASTLEDVGREIGLTRE
RVRQIQVEGLRRLREILQTQGLNIESLFQK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataataagccagaaatcaataagttaaaggttgattcagagtttgatgaaaat
ggatctgaggtttttgatgaggaagttattgttgaaaatgaacctgttgataacgaatta
gcagaagatgaattattatctcagggtataacacaatgtgttttagatgctacacagctc
tatttagctgaaataggttattctccactattaacagcagaagaagaagtattatttgca
cgtcgtgcattacgtggggatattgcttcacgtcgtcgtatgatagaaagtaatttacgt
ttagtcgtgaaaattgctcgtcgttatagtaatcgcggattagcgttattagatctgatt
gaagaaggtaatctaggtttaattcgcacagtggaaaaatttgatccagaacgaggattt
cgattttcaacatacgctacttggtggattcgtcagactattgaaagagctattatgaat
caaactcgtactattcgtttaccaattcatattgtaaaagagttaaatgtttatttacgt
actgcgcgtgaactttcacataaactggatcacgaaccaagtgctgaagaaattgcacaa
caactatataaacctgttgatgatgtcagccgtatgctttgtcttaatgaacgtatcaca
tcagttgatactccactatgtggagattcagaaaaagcactgttggatgtcttagctgat
gataaagataatggtccagaagacactacacaagacgatgatatgaaacaaagcatcgtt
aagtggttatttgaactaaatgctaagcagcgtgaagtattagcacgtcgttttggttta
ttaggttatgaggcatcaacattagaagatgtaggtcgagagataggtttaactcgagag
cgtgttcgtcaaatccaagttgaaggtttacgtcgtctgcgtgaaattctgcaaacgcaa
gggcttaatatagaatcgctatttcaaaaataa
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