KEGG   Pyrobaculum calidifontis: Pcal_0039Help
Entry
Pcal_0039         CDS       T00483                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pcl  Pyrobaculum calidifontis
Pathway
pcl03030  DNA replication
pcl03410  Base excision repair
pcl03420  Nucleotide excision repair
pcl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pcal_0039
   03410 Base excision repair
    Pcal_0039
   03420 Nucleotide excision repair
    Pcal_0039
   03430 Mismatch repair
    Pcal_0039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcl03032]
    Pcal_0039
   03400 DNA repair and recombination proteins [BR:pcl03400]
    Pcal_0039
Enzymes [BR:pcl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pcal_0039
    6.5.1.6  DNA ligase (ATP or NAD+)
     Pcal_0039
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Pcal_0039
DNA replication proteins [BR:pcl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Pcal_0039
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Pcal_0039
DNA repair and recombination proteins [BR:pcl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Pcal_0039
   NER (nucleotide excision repair)
    Other NER factors
     Pcal_0039
   MMR (mismatch exicision repair)
    Other MMR factors
     Pcal_0039
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 HECT
Motif
Other DBs
NCBI-ProteinID: ABO07479
UniProt: A3MS62
LinkDB All DBs
Position
complement(42958..44709)
Genome map
AA seq 583 aa AA seqDB search
MQFGELAKVLAAVESTTQRTTMVKLLTSLFKKAKPEEIDKIVYFILGDLRPPWEGVELGV
AEKLCIRAISKATGLSAAELEGWYKKSGDVGEVARRALAAGKRPTLLAFAQQKPLEVAEV
YDTLLKVAKAAGEGAQDLKVSLLSSLFSRASPEEAKYIARFVVGKLRLGVADMTLIEALS
EAFGVSKEGLERAYHVYPDLGRLARHVAEGRPLEEIKITPGVPVLPMLAQRLSSASEILA
KLGGTAICEYKYDGERAQIHLREGSVKIFSRRLEDITHAYPDVAKAVKEAVKAREAILEG
EIVAVDPDTGEMLPFQELMHRKRKHDVAEAMEAYPAVLYLFDLLYVDGEDLTTQPLIYRR
LRLSEVVEEGGDVYIAKWGMFDGAEDVDLFFHEAVSLGTEGLICKSPTSTYEMGARGWNW
IKYKRDYRSEMIDTVDLVVVGAFHGRGKRAGLYGAFLLAAYDPSTDMFYTVCKVGSGFTD
ADLRRMYDMLQPLKIPHRHPRVVSKMQPDVWFVPQVVIEVIGAEITLSPLHTCCIGAVKP
GVGLAIRFPRFTGRYRTDKRPEDATTTKELVEMYQRQKKVPTT
NT seq 1752 nt NT seq  +upstreamnt  +downstreamnt
atgcaattcggcgagttggccaaggtcttagctgccgtggagagcacgacgcagcggacc
accatggtgaagctactcacctcgctctttaaaaaggccaaaccggaggagatcgataaa
attgtatacttcatcctgggcgatttgagacccccctgggagggggtagagctgggtgtg
gccgagaagctctgcatccgcgccatctcaaaggccaccggcctctcggccgcggagctc
gaggggtggtacaagaagagcggagacgtgggcgaagtcgcgaggagagccctggcggcg
ggcaagaggcccactctcctggccttcgcccagcagaagccgctggaggtggccgaggtt
tacgacaccttgctcaaggtggccaaggccgcgggagagggggcccaggacttgaaggtg
tctctcctctcctcgctcttctcccgcgcctcgcccgaggaggccaagtacatcgcccga
tttgtagttgggaagctcaggctgggagtagccgacatgactctcatagaggccctctcc
gaggccttcggcgtgtctaaggaggggcttgagagagcttaccacgtctaccccgaccta
ggccgcctggcgagacatgtggcagaggggaggccgctggaggagataaaaatcacgccg
ggggtccctgttctccccatgctagcccagcgcctctcctcggcgtcggagatcttggcg
aagctaggcggcacggccatctgcgagtacaaatacgacggggagagggcccagatacac
ctaagagagggctcggtgaaaatattcagcaggaggcttgaggacattacccacgcatac
cccgacgtggccaaggccgtgaaagaggcggtcaaggcgagggaggccatactggagggc
gaaattgtggcagtggacccagacaccggggagatgttgccattccaagagcttatgcac
cggaagcggaaacacgacgtggctgaggcaatggaggcctaccccgcagtcctctacctc
ttcgacctcttgtacgtagacggggaggatttaaccacccagcccctcatctacaggagg
ctacgcctatccgaggtagtagaggaggggggagacgtctacatagccaagtggggaatg
ttcgacggcgcggaggatgtggacttgttcttccacgaggccgtctccctgggcacagag
ggcctcatctgcaaatcccccacttccacatacgagatgggggccaggggctggaactgg
attaagtacaagagagactacagaagcgaaatgatagacacagtagacctagtggtagtg
ggcgctttccacggcagaggaaaaagggcaggcctctacggggcgtttctgctggcggcc
tacgacccctcaaccgacatgttttacacagtgtgcaaagtcggtagcggattcacagac
gcagacctccgcaggatgtacgacatgctccagcccctcaaaataccccacagacatcca
agagtagtctccaaaatgcagccagacgtctggttcgtgccccaggtggtgatagaggtg
ataggcgcagagatcaccctctcacccctccacacgtgttgtataggcgcggtgaagccc
ggcgtggggctcgccattagattcccacgattcaccggccgctacaggacagacaaaagg
ccagaagacgccacaaccacaaaagagctcgtggaaatgtaccaacgccaaaagaaagta
ccaaccacctaa

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