KEGG   Pedobacter cryoconitis: AY601_3223Help
Entry
AY601_3223        CDS       T04341                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcm  Pedobacter cryoconitis
Pathway
pcm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AY601_3223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcm03400]
    AY601_3223
Enzymes [BR:pcm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AY601_3223
DNA repair and recombination proteins [BR:pcm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AY601_3223
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2 DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AMQ00094
UniProt: A0A127VFJ5
LinkDB All DBs
Position
complement(3835569..3838217)
Genome map
AA seq 882 aa AA seqDB search
MSLTAYKKKRSFAQTPEPKGGKGSGKELRFVIQKHDASHLHYDFRLEMGGVLKSWAVPKG
PSTDPEVKRLAMMVEDHPYDYKDFEGLIPKGEYGGGTVIVWDEGTYEPDEPVDGTIEDQD
RNLRHQLHSGKISFTLHGKKLKGSFALVRTHGMGENSWLLIKHKDKYAKSDDILLKDKSV
ISKKTIEQMAKKPVQVYGKKTIKPKQPDAVKPEAEAVKSKLAEAVKPKQNKIVKTPFYDQ
VKPMLATLVDEAFDKEGWLYEVKWDGYRAVALMNKGSVEFKSRNNKSFQEKFYPIYQALL
EWNVNAIVDGEVVSVDKKGKASFGDLQNWHSDQNGELLYYVFDILWYDGHDLTVLSLMQR
KAILAQLIPENSPVRLSKGFETSGIEFLAAAKKAGLEGIMAKRKDSLYVAGERTNDWLKI
KASKRQEVVIGGYTKNAGTSKPFSSLLVGLFEGGKFIYTGKIGTGFSMEMQQELLARFEP
LLIAEPAFTEKPAYNKANPFRAGLGKAKAFWLKPEMICEVNFAEMTTDGVMRHPSFAGMR
EDKDAKEVVLEKEADTSAILAGTDDDLTKLNGMKQLLNPKEETQVKKVNGHSLEFTNLNK
IFWPVEQFTKRDLINYYEQMSSFILPYMKDRPLSLNRYPNGITGESFYQKDVTGKVPDWV
KTYLYHAEGDDSDKHFMLGEDKATLLYSAGLGCIEVHPWSSTIKKPDYPTWCIIDLDPDK
NSFQQVIEAAQVTKAVLDDMGVPCYCKTSGSTGLHVYIPLGNKYTYEQSKEFARIIVTLV
NREIPAYTSLERAVSKRKGKMYLDFLQNRPQATIAAPYSLRPKPGATVSMPLHWDEVKKG
LEMKDFTISNALSRVKETGDIFKPVLGKGIDLKKIIKGRQLK
NT seq 2649 nt NT seq  +upstreamnt  +downstreamnt
atgagtttaacagcctataaaaagaaacgatcttttgcgcagactcctgaacctaaaggg
gggaaaggaagtggaaaagaattgcgctttgtcattcagaaacacgatgcttcacatctt
cattatgatttcagactggagatgggtggggtattgaaaagctgggccgttccaaaagga
ccttccacagatccagaagtgaagcggcttgccatgatggttgaggaccatccttacgac
tataaagattttgaaggtcttattcctaaaggggaatatggtggaggaactgttattgtc
tgggatgagggaacttatgagccggacgagcccgtagatgggactattgaagatcaggat
cgaaacctgagacaccagctgcatagtggtaaaattagtttcaccttgcatggcaaaaag
ctgaaaggttcttttgcgctggtcaggacccatggaatgggggagaatagctggctttta
attaagcataaagataaatatgccaaaagtgacgatattttgctgaaggataaatcggta
atctccaaaaagactattgagcaaatggcgaagaaacctgttcaggtttatggaaaaaaa
acgattaaacctaagcagcctgacgccgttaaaccggaggctgaagctgttaaatccaag
ctggctgaagctgttaaacctaaacagaataaaatcgtgaaaacccctttttacgatcag
gtaaaacctatgctggctaccttggtagatgaggcatttgacaaagagggctggttgtat
gaagtgaaatgggatggttaccgggcggtggctttaatgaataaaggaagcgtagaattc
aagtccaggaacaataaatctttccaggaaaagttttacccgatttatcaggcgctacta
gaatggaatgtcaatgcaattgtagatggtgaggtcgtttccgttgacaaaaaaggaaag
gctagtttcggggatttacagaactggcacagcgatcaaaatggagagttgctatattat
gtttttgatattttatggtatgatgggcatgatcttaccgttttatctttgatgcaaaga
aaggctatacttgctcagctgattcctgaaaattctcctgtgaggcttagtaagggtttc
gaaacctcaggcatagaatttctggctgctgcaaaaaaggctggactggaaggtattatg
gccaaaagaaaagatagtttatatgttgctggcgagcgcaccaatgattggcttaaaatc
aaagcaagtaagcgtcaggaagtagttattggcggatatacgaagaatgcaggcacgagt
aaaccttttagttcattattggttggcttgtttgaaggtggtaaatttatttatacggga
aaaattggtacaggatttagtatggaaatgcagcaagaattgttggctcgttttgaacca
ttgcttattgctgaaccagcattcactgagaaaccagcttataataaagccaatccattc
agagctggtttgggtaaggcgaaggcattctggctgaaaccagaaatgatctgtgaagtt
aattttgcggaaatgactactgatggtgtaatgcggcacccatcttttgcaggaatgcgg
gaagataaagacgctaaagaagttgtccttgaaaaagaagcagatacatcagctattttg
gctggtactgatgatgatttaactaagctgaacggaatgaaacaattgctgaatccaaaa
gaagaaacccaggtaaaaaaagtaaacggacattccctggaatttaccaatttgaataag
atattctggccagttgaacaattcaccaaacgtgacctgattaattattatgagcagatg
tcatcctttatattgccgtatatgaaagaccggcctttgtccttaaaccgttatccaaac
ggaattaccggagaaagtttctatcagaaagatgtgactggaaaagtccctgattgggtt
aaaacttacctttatcatgctgagggggatgattcagataagcattttatgctaggggaa
gataaagccacgttattgtactccgcaggccttggctgtattgaagttcatccctggagc
agtaccattaaaaaacccgattatccgacctggtgtattattgaccttgatccggataag
aattctttccagcaggtaatcgaagcagcacaggtaaccaaggctgtgctggatgatatg
ggtgtaccctgctattgtaaaaccagtggctctaccgggctgcatgtctatattccttta
ggcaacaaatacacttatgagcagagtaaggagtttgcgaggatcattgttacgctggtt
aaccgggagatacctgcatatacaagtctggagcgtgctgtttccaaacggaaggggaaa
atgtaccttgactttttgcagaaccgtcctcaggccactattgctgctccatattctctg
cgccctaaacctggcgctacggtttctatgccattacattgggacgaagtgaaaaagggg
ttggaaatgaaagactttacaatttccaatgctttatccagagtcaaagaaacgggtgat
atttttaaaccagtattagggaaaggaattgatcttaagaaaattattaaaggcaggcaa
ttgaaataa

DBGET integrated database retrieval system