Pedobacter cryoconitis: AY601_4286
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Entry
AY601_4286 CDS
T04341
Name
(GenBank) Pseudouridine synthase
KO
K06969
23S rRNA (cytosine1962-C5)-methyltransferase [EC:
2.1.1.191
]
Organism
pcm
Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcm03009
]
AY601_4286
Enzymes [BR:
pcm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.191 23S rRNA (cytosine1962-C5)-methyltransferase
AY601_4286
Ribosome biogenesis [BR:
pcm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AY601_4286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PUA_3
Methyltrans_SAM
Cons_hypoth95
Methyltransf_15
Met_10
PrmA
MTS
FtsJ
Methyltransf_25
TRM
Methyltr_RsmB-F
ADDz_Dnmt3b
Motif
Other DBs
NCBI-ProteinID:
AMQ01135
UniProt:
A0A127VII5
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All DBs
Position
complement(5004457..5005677)
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AA seq
406 aa
AA seq
DB search
MFTIAFCYLCNMIDVVLKKGKEKAVHQKHPWVFSGAIDKVKGSPLNGEVVKVLAADQSFL
AYGYYNGQSRVAVRLLEWEEDNIIDKAWYEVRLKNAIASRTHLLSDQQTNTCRLVFSEAD
YLPGLIVDKYADYLSLQILSAGMENVKAELIELLIAALNPIGIFDKSDANARTHENLEVS
QGLLWGETPPEFIEVKENGVRYHINIADGQKSGFYCDQRDNREILAAYTKDKEVLDCFCY
SGGFTLNSLKHGAKHVTSVDSSALAMETLKHNLGLNGFMEHQQTSVQSDVNKQLRVFKED
GKLFDVIVLDPPKYAPSRSALDRAARAYKDLNRLGMLLLKKGGILATYSCSGAVDLETFK
QIIAWAALDAGREVQIIKQFHQPEDHPVRISFPEGEYLKGLLLRVL
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgttcactattgctttttgttacctttgtaacatgattgatgttgtacttaaaaaaggc
aaagaaaaagccgtccaccaaaaacacccctgggtattttcaggagctatagataaagtt
aaaggtagtccattgaatggagaggttgttaaggttcttgctgccgaccagtccttttta
gcttatggctattataacggccaatcacgcgtagcagtgcgtttattggaatgggaagaa
gacaacattattgacaaggcctggtatgaagtgagattgaaaaacgcgattgcttcgcgc
acgcacttattgagcgatcaacaaacaaacacctgtcgtttagtatttagtgaggccgat
tacctgcccggattgatcgttgataaatatgctgactacctttctttgcaaattctaagt
gcaggaatggaaaatgttaaagcagagctgattgagcttttaattgcagcattaaatcca
atcgggatctttgataaaagtgatgccaatgcacgcacacacgaaaacctggaagtttca
caaggcttactttggggagaaaccccaccagagtttatcgaagtcaaagaaaatggcgtt
cgctatcatatcaatattgctgacggacagaaatctggtttttactgcgatcagcgtgac
aaccgtgaaattcttgcagcttataccaaagataaagaagtactggattgcttctgttac
agtggagggttcacgctgaatagcttaaaacatggcgctaaacatgtaactagtgtagac
agttcagcgctggctatggaaaccttaaaacataaccttggtttaaacggctttatggag
catcagcaaaccagcgtacagtctgacgtaaataaacaactccgcgtttttaaagaagat
gggaaactatttgacgtgatcgtacttgacccacccaaatatgcaccttcaagatctgct
ttagacagagctgcgcgcgcttataaagacttaaatagattagggatgctattgcttaaa
aaaggtggtatactggctacttattcttgttcgggcgcggttgatctggaaactttcaaa
cagattattgcatgggcagcattagacgctggcagagaagtacaaattatcaaacaattc
catcaaccagaagaccacccggtaagaatttcgtttccagaaggagaatatcttaaaggt
ttattattgagggtattgtaa
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