Porphyromonas crevioricanis: NCTC12858_01216
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Entry
NCTC12858_01216 CDS
T05510
Symbol
pbpD
Name
(GenBank) Penicillin-binding protein 4 precursor
KO
K05366
penicillin-binding protein 1A [EC:
2.4.99.28
3.4.16.4
]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre00550
Peptidoglycan biosynthesis
pcre01100
Metabolic pathways
pcre01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NCTC12858_01216 (pbpD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NCTC12858_01216 (pbpD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pcre01003
]
NCTC12858_01216 (pbpD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pcre01011
]
NCTC12858_01216 (pbpD)
Enzymes [BR:
pcre01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
NCTC12858_01216 (pbpD)
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NCTC12858_01216 (pbpD)
Glycosyltransferases [BR:
pcre01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
NCTC12858_01216 (pbpD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pcre01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
NCTC12858_01216 (pbpD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
DUF5623
Motif
Other DBs
NCBI-ProteinID:
SQH73361
UniProt:
A0A2X4SU64
LinkDB
All DBs
Position
1:1398213..1399703
Genome browser
AA seq
496 aa
AA seq
DB search
MDDFDGFVIYSKKDESFVPYGVTSSNSECHAISNYIPSSVKEVLVEIEDIRFFKHKGIDI
KAILRALIVNIIVGRIVQGGSTITQQLARNLLKDNSKTIVRKLKESTLALKLERKYSKEE
ILNLYFNNIYFGKNLRGIRTAGLYYFQKEVNQLSHAQLLFLITILRGPNFYSQNLEQAKR
RYLFISKKMMFMDVISNGSYNKLIKSYPQILYNQLVVVRPASLPFIVERVDNKTKTLFSS
INTEIQALVAKNVRESKYPMSIIAIRNKKVVAFSSSYGTDYVFTNKTNVGSTLKPFIYCF
LREQGVNKYEVFPSTYNNQNWNVREASSFKDNLSIDDALYFSNNNVFINASEKVGIEKVL
EYLSKLLNKPLSSFTLSSLLGATEDGISLYELCSVYSTFFSQDIKDGIKSDCFQILNDIF
RNKLDLDINNVFLKTGTTNNNTERFAVFGNAELTFAVLKNENPINDYSKEGGFIYGVKKI
FSDIFNRQKKCTREWM
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttgacggttttgtgatttactcaaaaaaagatgagagcttcgttccttat
ggagttacttctagcaatagtgaatgccatgctatatcaaattatattccatcctcagta
aaagaagttcttgtagagattgaagatattcgcttttttaaacataagggtattgatatc
aaagctattttaagagctttaattgtcaatataattgttggacgtattgttcaagggggt
agtactattacacaacagcttgcgagaaatttacttaaagataacagtaaaaccatcgtc
agaaaactcaaagagtctactttagctctcaaattagaaagaaagtattcgaaagaagag
attttaaatctgtattttaataatatttactttggaaaaaatcttcgtggtataagaact
gctgggctttattactttcaaaaggaagtcaatcaactatcacacgctcagcttcttttc
ttaatcacaatcttaagaggaccaaatttttattctcagaatctcgaacaagcaaagagg
agatatttgtttataagtaaaaaaatgatgttcatggatgtcatttcaaacggcagttat
aataaattaataaaaagttatccacaaatactctataatcaattggttgttgttagacca
gcatcacttccttttattgtggaaagggtagacaataaaactaaaacgttattctccagc
ataaatacagaaattcaagctcttgttgcaaaaaatgtaagggaatcaaaatacccgatg
tcaattattgctattagaaataaaaaagtagtagcattctcaagttcttatggaactgat
tatgtgtttacaaacaaaacaaatgtaggctccacattaaagccatttatatattgtttc
ttgagagagcaaggtgttaataagtatgaagtattcccatctacatataataatcagaat
tggaatgttagagaagcatcttcctttaaagacaatctctctatagatgatgccttatat
ttctctaataacaatgtatttattaacgcttcagaaaaagttggtatagaaaaggtactt
gaatatctatcaaaacttttgaataaacctctttcttcatttacattgtcaagtttatta
ggagctacagaagatggaatctcattatatgaactctgctctgtatactctacctttttt
tctcaagatataaaagacggtataaaatctgattgtttccaaattcttaatgatatcttc
agaaacaagctggatttagatattaataatgtttttttaaagacaggaacaaccaataat
aatactgaaagattcgctgtctttggtaatgcggaacttacatttgcagttctaaagaat
gaaaatcctattaatgattactctaaagagggaggatttatttatggagttaagaaaata
ttctccgatatatttaatcggcagaaaaaatgcacaagagaatggatgtag
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