Porphyromonas crevioricanis: NCTC12858_01486
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Entry
NCTC12858_01486 CDS
T05510
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre03030
DNA replication
pcre03430
Mismatch repair
pcre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12858_01486 (dnaE)
03430 Mismatch repair
NCTC12858_01486 (dnaE)
03440 Homologous recombination
NCTC12858_01486 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcre03032
]
NCTC12858_01486 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcre03400
]
NCTC12858_01486 (dnaE)
Enzymes [BR:
pcre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12858_01486 (dnaE)
DNA replication proteins [BR:
pcre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12858_01486 (dnaE)
DNA repair and recombination proteins [BR:
pcre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12858_01486 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
SQH73622
UniProt:
A0A2X4SI66
LinkDB
All DBs
Position
1:complement(1708514..1712173)
Genome browser
AA seq
1219 aa
AA seq
DB search
MEPFIHLHVHSQYSVLDGQCRISDLVDAAIADGMPALALTDHGAMFGIKEFYNYVQKKNK
PHLSVIKDCQRELQELLEKSNSDEDDLQRIQKLQHKVETEQKALIKPILGCECYCARRSR
HDKSKEIMDPYRPSRPLDSGGWHLIVLAKNSVGYHNLIKLVSYSWTEGQYYRPRIDKELL
ERYHEGLIVSSACLGGEIPQHIMAGQIDEAEKSVLWFKELFGDDFYLEIQRHETTNPLGN
QDTYPKQQQVNRVILELARKHDVKVIATNDVHFISKEAAEAHDRLICLSTSKDLDDPNRM
RYSKEEWFKTTEEMNAIFSDVPESLSNTLEIADKVEYYSIDSDALMPDFPIPDEFANDDE
YLRHLTMLGAERRYKENLTPEVRERIDFELETIKKMGFPGYFLIVQDFIAAARNMGVSVG
PGRGSAAGSAVAYCLGITDIDPIKYDLLFERFLNPDRISMPDIDVDFDDDGRADILDWVT
EKYGKERVAHIITIGTMATKSAIKDVARVQKLPLSISNDLTKLVPDKIPGVKKVTVTAAI
EAVPELKAASLSDDKQLSSTLKYAAMLEGNVRNTGVHACGIIIGKTDISDVVPVSTAKDG
DKEVLVTQYEGSVIEETGLIKMDFLGLKTLSIIKEAISNIKKTKGIELDISNIPLDDPLT
YKLYSEGRTIGTFQFESMGMQKYLRELKPSAFGDLIAMNALYRPGPMDYIPSFIARKHGL
EEITYDLPVMERYLKETYGITVYQEQVMLLSREIAGFTRGESDSLRKAMGKKLEDKMLAL
QAKFLEGGIKNGYEEKTLQKIWADWKKFTQYAFNKSHATCYSWVAYQTAYLKAHYPSEYM
AGALSRNLNNITEITKLMDECKSMKIQVLVPDVNESDYKFSVNANGDIRFGLSAIKGVGL
GAVESIIEERKKNGLYKDVYDFAERINTVQCNRKTMESLALSGAFDSFGLKREQYLAPCG
KDESFIVALSKYGSMVQEEKHAQEVSLFGDDESMQLPKPQPEEADSWNSLEILNKERDLV
GLYLSSNPMEPYRVILDYYCNVKSVDLMDLKPLNGKNIAFAGIVTKARVGMSKKNNPYAI
LTIEDFHGTAEVALFGQNYVSYGNYAKEGLYLLIKATVQPHRFDPEKVELQIRSIELLPD
IADKLIKEVSVSISLDQLSNDLAESLTAFVMEHPGEANLNIQVQDRKKQIRLQSSRYRVD
PSPDFIKLLEQYELPIVIV
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggaacccttcattcacctgcacgtacactcgcaatattccgttttggatggtcaatgt
cggattagtgacttagtcgatgctgctatagctgatggtatgccggctctggccctgact
gaccacggagctatgttcgggatcaaagagttctataactatgtgcagaagaagaacaaa
ccacatttgtctgttatcaaggattgccagcgagagttgcaggagcttctggaaaagtcc
aactccgatgaggatgatttgcagcgaatacaaaagttgcaacacaaggtagagacggag
caaaaggcccttataaaaccaatcttgggctgtgagtgctattgtgccagacgaagccgg
cacgacaagagtaaggaaataatggacccctaccgtccttctcgtcctttagactctgga
ggttggcatttgattgtattggcaaagaacagtgtaggctatcataacctgatcaaactg
gtttcttattcttggactgaggggcaatattatcgtccacgaattgacaaagaactactt
gagcgataccatgagggattgatagtgagttcggcttgtctcggaggcgagatcccccaa
catattatggctggacaaatagacgaagcagagaaaagtgttttgtggttcaaagagctt
ttcggtgacgatttctatttggagatacagcgacacgagacaacaaatcccttgggaaat
caggatacttatcccaaacagcagcaggtcaatagggttatcttggagttggcacgcaaa
cacgatgtgaaagtgatagctaccaatgatgttcatttcatatcgaaagaggccgcagag
gcccacgacaggcttatttgtctgtccacttctaaagatttggatgaccctaatcgtatg
cgctacagcaaggaggagtggttcaagacaactgaggaaatgaatgccattttctccgat
gtgccagagtctttgtccaatacattggaaattgccgataaggtagagtattacagcata
gatagtgatgccttgatgccggatttcccgataccggacgagtttgccaatgatgacgag
tatttgcgacatcttaccatgcttggagcagagcgtagatataaggaaaacctaactccc
gaagtgcgagagcgtattgactttgaattggagacaatcaaaaaaatgggatttcccggc
tacttccttatcgtccaggactttattgctgcggcacgtaatatgggtgtctctgttggc
cccggtcgtggttcggctgccggctcggccgttgcttattgtttgggtataacggatata
gatccaatcaagtacgatctgctttttgagcgttttctcaatccggatcgtataagtatg
ccggatattgatgttgattttgacgatgatggtagagctgatatccttgattgggtgacg
gaaaaatatggaaaagagagggtcgctcacatcatcactattggcaccatggcgacgaag
agtgccattaaagatgttgccagagtacagaagctaccactctctatcagcaacgatctc
accaagctggtgccagataaaatcccgggggtaaagaaagtaactgtgacggctgctata
gaagctgtaccggagctaaaggcagcatcgttgagtgatgataagcagctcagtagtacc
ctgaagtacgcagcaatgctcgaagggaatgttcgtaacacgggtgtacatgcttgtgga
atcatcataggcaagactgatattagtgatgttgtaccggtcagtacagccaaggacgga
gacaaagaggtccttgtgacgcaatatgaaggctctgtgattgaagaaacaggcctgatc
aagatggactttcttggccttaaaactttgtctataatcaaggaagccatatccaacatc
aagaagacaaaaggcattgaattggatatatcgaatattcctcttgatgatcctctgact
tataaactttatagtgaggggcgtactataggtacattccaatttgaatccatgggtatg
cagaaatatctgcgtgagctgaaaccttctgcctttggagaccttatcgctatgaatgct
ctctatcgtcccgggcccatggactatatacccagcttcatcgcccgcaaacatggactg
gaagagataacttacgatcttccggtgatggagcgatacctcaaagagacttatggtata
acagtctaccaggagcaggtcatgcttttatccagagagatagccggtttcacaagagga
gagtcggactccctgcgtaaagcaatgggaaagaaactggaggataagatgctggctctt
caggcaaaattcttggagggaggtattaagaatgggtatgaggagaagactctccaaaag
atttgggcagattggaagaaatttacccagtacgcattcaataagagtcatgcgacttgc
tacagttgggtcgcttatcagactgcttatctcaaggctcattatccttctgagtatatg
gcaggggcactaagccgaaatctgaataacattaccgaaatcaccaagttgatggatgaa
tgtaagtccatgaagattcaggtgttggtaccagatgttaatgaatcggactacaagttc
tcagtaaatgccaatggagatattcgctttggtctttcggccataaaaggggtaggtctc
ggagctgtcgaatcaatcattgaggagcgcaaaaagaatggcctttataaggatgtttat
gattttgcggaacgtatcaatacagtgcagtgcaaccgtaagaccatggaaagtttggcc
ttgtccggtgcttttgacagttttggtctgaagagagagcaataccttgctccttgcgga
aaagatgagagtttcattgttgccctttctaaatatggcagcatggtacaggaagaaaaa
catgcacaggaggtcagtctttttggtgatgatgaatcaatgcaattacccaaaccacaa
ccagaggaggctgattcttggaatagtttggaaattctaaataaagaaagagatttggtt
ggcctatatctttcttccaatccgatggagccatatcgagttattttggactattattgc
aatgtgaagagtgtagacttgatggatttgaagcctctcaatggaaagaatattgctttt
gccggtattgtgacaaaggctagggtggggatgagtaagaaaaataatccttatgcaatt
cttacgatcgaagacttccatgggacagcagaggttgctctctttgggcagaactatgtt
tcatacggcaactatgctaaggagggcttgtatctcctcattaaggcaaccgtgcaacct
catcgcttcgatccggaaaaggtggagctacagattcgctcgatagagttgcttcccgat
attgctgataagttgattaaggaagtgtctgtatcaatatccttggatcagctttccaac
gatttggcagagagtttgactgcgtttgttatggagcatcccggagaggctaatttgaac
atccaagttcaggatagaaagaagcagattcgtttacagtcgagtcgttatagggtcgat
ccttctcccgattttattaaattgcttgaacaatacgaacttccaatagttatagtctga
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integrated database retrieval system
