Pectobacterium carotovorum subsp. carotovorum PC1: PC1_0404
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Entry
PC1_0404 CDS
T00934
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
Brite
KEGG Orthology (KO) [BR:
pct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pct03016
]
PC1_0404
Enzymes [BR:
pct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PC1_0404
Transfer RNA biogenesis [BR:
pct03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PC1_0404
Prokaryotic type
tRNA splicing ligases
PC1_0404
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ACT11460
UniProt:
C6DJP7
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All DBs
Position
461052..462287
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AA seq
411 aa
AA seq
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MEEMKMQDYDMMSPVNSAPVKMWTQGVPVEPEARDQLLNTAKMPFIFKHLAVMPDVHLGK
GSTIGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLMGLRSAIEQAVPHGRSV
TRSKRDVGSWQNPPQTVDAHWSLLEPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEIC
LDEVDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQQHIANLPDRNLAYFEEGSLHFDDYI
EAVEWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLIT
RKGAVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQ
IRATAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatgaaaatgcaggattacgacatgatgtcgcccgtgaatagcgcaccggta
aaaatgtggacgcagggcgtgcctgtggaaccggaagctcgcgaccaactgctgaacacg
gccaaaatgccgttcatttttaaacatttggcagtgatgccggatgtgcatttgggaaaa
ggatcgacgattggtagcgtgatccctacgcgtggcgcgattatcccggcagcagtcggc
gtggatatcggctgcgggatgattgcggtgcgtacgtcactggttgccagcgacctgccg
gataacctgatggggctgcgtagcgcgattgaacaggcggtgccgcacggacgtagcgta
acgcgttccaaacgtgatgtcggttcctggcagaacccgccacaaacggttgatgcgcac
tggtcactgctggaaccgcgttttaaacgtttgacggataaatatccgcagttgctgaaa
accaacaattaccagcatttgggaacgctaggaacgggtaaccactttattgaaatctgt
ctggatgaggtcgatcgcgtgtgggtgatgttgcacagcgggtcgcgtggtgtggggaat
gcgattgggtcgctgttcatcaagctggcgcaggaagatatgcagcagcacattgcgaat
ctgccggatcgtaatctggcgtatttcgaggaaggtagcctgcactttgacgattatatc
gaagcggtggagtgggcacaggattttgcccgtcataaccgtgaagtgatgatgtcgcat
acgctggcagcgctgtctcgcattgtgacgaagccgtttaccacccagcaggaaggcgtg
aactgccaccataactacgtgcagcgcgaaacgcactttggtgaatcagtgctgatcacc
cgtaagggagctgtgtcggcgcagaaaggtcaaatggggattattccggggtcaatgggg
gcgaagagcttcatcgtacgcggattggggaacgaagagagcttctgttcctgtagtcac
ggcgcggggagaaccatgagccgtactgccgcgaaaaaacgcttcaccgtggaagaccag
attcgcgcgacggcacacgtcgagtgcagaaaagacagcgacgttatcgatgaaatcccg
atggcgtacaaagatatcgataaggtgatggcggcacagtcatcgctggtggaaattgtg
cacacgctgcgtcaggtggtgtgtgtgaaaggataa
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