Pectobacterium carotovorum subsp. carotovorum PC1: PC1_3233
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Entry
PC1_3233 CDS
T00934
Name
(GenBank) YD repeat protein
Organism
pct
Pectobacterium carotovorum subsp. carotovorum PC1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
Ribonuclease
DUF4595
CarboxypepD_reg
OCRE
SpaA
DUF4112
CarbopepD_reg_2
Motif
Other DBs
NCBI-ProteinID:
ACT14253
UniProt:
C6DCS8
LinkDB
All DBs
Position
complement(3638202..3643121)
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AA seq
1639 aa
AA seq
DB search
MSQDKQDSLHQSSAAAEKKFSTDKIIQGGCKECKCETFVQYVYSSGDPVPNAPFVLTDSK
GNKTDGQTDENGYFKIQNMACSTYQLDIHEGSDDFDSPDTVENNPVLQANPAHAALAGEY
FTLYLLLHEKGIVEYDAEDSERYDEVNVDDSTWSGRFFSNVEDKYQLAYDRFQILKKQIN
AGDREFKRAINKIHHSLSAEVADQTTETAVLLLCQIILGFIPVVGQAPDVYFIGEWCWAA
YKKPDNLEDNYFLAEGALNIVGVIPGPGHALKIAGKSVVRAMKALEKSALDNQAVQLAVR
EIRNLSNGNIVRWLMDFAEKINKEAKEALSLLNKIITAIELMVNNATSSAKSWIIAFAKD
SFSAICGVIKKLINKFKEIIDEIIQKVNTFIGKIITRKSGTAVGKDKAAKPEIKVADKTP
SDVDGTPGHASSTAGTADGKTCSTSNKCQGEGEPVDMATGYMVEWRTDFQLAGILPLAIK
RYYRSGGERKPGLLGSLWRSNWDISLTLEDGVVTLIDGEFNQAIFVLPVEGESTRSPSNP
QWRLIRQQGRLILQDAGGLHYRFEHARGKELCLTSIEDRQNNQISLIWEFGVLRWVALPD
NRLIHVETRRQRITCLTLCDTHRKPLKKLANYTYDNSGHLLSVRADEGRNFDYRYSPEGW
LLRWSDLGSTWVEHDYDKKGRVIRDRTSEGYWPGHFEYDDDTLTSHYYSGFGGVISYVRD
DRNNILLKRTPDGGETRFEWVDNQLAAETDPLGGRTVYQRNDWGQVTEVILPDGATHQYA
YDDNGHLLAYIDPLGSEWRYQRNAAGQVVEVNDPEGREWLYRYGDTGQLSTVIGPDGVLQ
RYHYNRRGLLSSLERDNAPPVAFRYDDLDRLTERHIGHEAGVQVRRWEYDGARESPSKVV
YEDGSETRFGYDVEGNLTAVTDALGQRYQFRYGAFDNLLEATDPLGATVRYHYNAEAEFA
GVTNSQGRDWTYGFDSSGRLSEERHYDGRVYRYQYDVADRLVQRTAPDGSELHYEHDAAG
RITYITARKADGETDGITELAYDVAGRLTKAASPDAVVEYAYNRAGQVTSETVNGEAVQS
GYDAGGQRAVVEGILAPLQLAWQSGRLSSLGIGSHQPLQFSHTAAGEEQRRTNGSGFSLR
HEWSPTGLLQRQALEGADGRVNDVLERRYQYDVLDRLTGISDSHWGEQAFRLNGAGQVTA
ERRDEGRRRQARLFGYDSEQNLCEVSQIAPGLGETLKVQDAVVQSSARYDAAGRVIERGH
TQYRYDDCGRLAVKRETRPGFRPKETYFDWDVQDRLVRVSLPDGVRWRYRYDAFGRRINK
VREGQVPSAQAVARVAYRWDGDQLIGQQQFRADGSAAREVQWVYEPGSFRPLAQVEAQGD
STQLHYIVTDLTGTARELCSEEGEIRWRGEQGLWGAHREERRPIPLRRYLGDAANEEVYC
ELRYQGQLYDAETGLYYNRHRYYDAESGQYLSPDPIGLLGGLRPQGYVANPLEFCDPLGL
ARSVCQARYERYKDYRSQGYSAEEAAKLSKGANPAMITPGSLPAAEEAAVNRTLGHIDNG
DKPAGALGKKWGTTFKNHQGELPGGSGANSPYSEYRVDPGPGVSGAGARRVVVNNNTGET
YYTWTHYGDSGNPSFVRIR
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggataaacaggattcattacaccaaagtagtgctgctgcggaaaaaaagttt
tcaacggacaaaatcattcaaggaggatgtaaagaatgtaagtgtgaaacctttgttcaa
tatgtctactcgtcaggagatcctgtaccaaatgctccttttgttttaaccgatagcaaa
gggaacaaaacggatgggcaaacggatgaaaatggatactttaaaatccaaaatatggcg
tgcagtacttatcaacttgatattcatgaaggctctgatgattttgattcccctgatacc
gtagaaaataatccagtacttcaagctaatcccgctcatgcagcattagcaggagaatat
tttaccctttatttactactgcatgaaaaagggattgtagagtacgacgctgaggacagt
gagcgttatgatgaagttaatgttgatgatagtacatggagtggacgatttttttctaat
gttgaagataaatatcagctagcctatgaccgtttccaaatattaaaaaaacaaattaat
gcaggggatcgtgaatttaagcgggcaattaataaaattcatcatagcttgtcggcagag
gttgctgatcagacaacagaaacagcagttttgctactttgtcaaattattctcggtttt
attcctgttgttggtcaggctcccgatgtctattttattggtgagtggtgttgggctgcc
tataaaaaaccagataacttagaggataactacttccttgctgaaggtgcactgaatatc
gtaggtgtcattccaggtcctggacatgcgctaaaaattgcaggtaaatctgttgttcgt
gcaatgaaagcattagaaaaaagtgcgttggataatcaggccgttcaactggctgttcgt
gaaattagaaatctatctaatggtaatatagttcgatggttaatggactttgctgaaaaa
attaataaggaagccaaagaggctttaagtctgctcaataaaataattacggctattgaa
ctgatggtgaataatgccacaagttcagcaaaaagttggattattgcatttgcaaaagat
agtttttcagcaatttgtggtgttattaaaaagctcattaataaatttaaagaaattatt
gatgagattatccaaaaagttaatacgtttattgggaaaattattaccagaaagtctgga
acagcggtaggaaaagataaggcggcaaagcctgaaattaaggtagcagataaaacgcca
tcagatgttgatggcactcccggtcatgcgtcatctacggctggtacggcagatggaaag
acctgctctacatcaaataaatgccaaggtgaaggtgaaccggtcgatatggccacaggg
tatatggtggagtggcgtactgatttccaattagcaggtattttaccgctggcgattaaa
cgttattaccgttctggtggtgagcgaaagcctggtttattaggatcattatggcgtagt
aactgggatattagcctgacacttgaagacggtgtggtgacattaattgatggtgagttc
aatcaggcgatatttgttttgcctgtcgagggtgaatctacgcgttcaccatctaaccct
cagtggcgattgatccgccaacagggacggttaattctgcaagatgccggtggtttgcac
tatcgctttgagcacgccagagggaaggaattatgcctaacatccatagaggatcggcag
aataaccagatctcgctgatttgggagtttggcgtattacgttgggtagctttgcctgac
aaccgcttgattcatgtggaaactcgtcgccaacgtattacttgtttaacgttatgtgat
acccatcgcaagcctttgaaaaaattggctaactatacctatgacaacagcggacattta
ttgagtgtgcgggcggatgagggacgcaactttgactatcgctactcaccggaaggttgg
ctgctgcgctggtcggatttaggttcgacctgggttgaacacgactacgataaaaaaggt
cgtgtaatacgtgatcgaacctcggaaggctattggccggggcactttgaatatgacgat
gacaccctgaccagccattactatagcgggtttggcggggtgatcagctatgtgcgcgac
gatcgcaacaatatcctgctcaaacgcacgccagacggcggtgagacccggtttgagtgg
gtggacaaccaactggcggcagagaccgacccgctgggtggccgcacggtgtatcagcgt
aatgactggggacaggtaaccgaagttatcttacccgacggcgcgacgcatcagtatgcg
tatgatgataatggacatctgctggcctatatcgacccgctgggcagcgaatggcgctat
cagcgtaatgcggcagggcaggttgtcgaggtgaacgacccggaagggcgcgagtggctg
taccgttacggcgacacggggcaactgtcgacggtgatagggccggacggtgtgttgcag
cgttatcactataatcgtcgtggtctgctgagcagccttgagcgggataatgcaccgccg
gtagcgttccggtatgacgaccttgaccgcctgacggagcggcatatcgggcatgaggcg
ggcgtgcaggtgcggcgctgggagtatgacggcgcgcgcgagtcaccgtcgaaagtggtg
tacgaagacggcagcgagacgcggtttggttacgatgtggaaggtaacctgacggcggtg
acggatgcactgggtcagcgctatcagttccgctacggagcgttcgataacctgctggaa
gcgaccgacccgctgggggcgacggtgcgctaccactacaatgcggaggctgagttcgcc
ggggtgacgaacagtcagggacgggactggacgtacggttttgacagcagcgggcgacta
agcgaggaacggcattacgacggtcgggtataccggtatcagtacgatgtggccgaccgt
ctggtgcagcgcaccgcgccggatggcagtgagctgcattatgagcacgatgcagcaggg
cggataacgtatatcacggcgcggaaagcggatggggaaacggacggcatcaccgagctg
gcatatgatgttgccggtaggctgaccaaagccgccagcccggatgcggtggtggagtac
gcctataaccgtgcggggcaggtgacgtcggaaacggtgaacggcgaagcggtgcagagc
ggttacgacgcgggtggtcagcgtgcggtggtagaggggattctggcgccgctgcaactg
gcctggcagtcgggacggctgtcatcgctgggtatcggctcccaccagccgttgcagttc
agccacacggcagcaggggaagagcagagacgcactaacggcagcggtttttcactgcgt
cacgagtggagcccgacggggctgttgcagcgtcaggcgctggaaggggcagacggccgg
gtgaatgacgtgctggagcgtcgttaccagtacgatgtgctggaccgtctgacgggcatc
agcgacagccactggggtgagcaggcattccggctgaacggggcaggtcaggtgacggcg
gagcgccgtgatgaggggcggcggcgtcaggcgcggctgtttggttacgacagcgaacag
aacctgtgcgaggtgtcgcagatagcgccgggtctgggtgagacgctgaaggtgcaggat
gcggtggtacagtcatcggcgcggtatgatgcggcgggacgggtcatcgagcggggccat
acacagtaccggtatgatgactgcgggcgtctggcggtgaagcgtgaaacacggccgggg
ttcaggccgaaggaaacatatttcgactgggacgtgcaggaccggctggtgcgggtgagc
ctgccggacggggtacgctggcgctatcgttacgatgcgtttgggcgcagaatcaacaag
gtgcgcgagggccaggtgccgtcggcgcaggcggtagcgcgggtggcgtaccgatgggac
ggtgaccagctgattggtcagcagcagttccgggcagacggttcagcggcacgggaagtg
cagtgggtatacgagccggggagcttccgaccgctggcacaggtcgaggcacagggcgac
agcacgcaactgcactacattgtgacggacctgacaggaaccgcgagagagttgtgcagc
gaggaaggagaaatccgctggcgtggcgaacagggactttggggcgcacaccgggaagag
cgacgacctatcccgctgcgtcgctatctgggggatgcggcgaacgaagaggtgtactgc
gagctgcgctatcaggggcagttgtatgacgcagaaacggggctttactacaaccggcat
cgttactatgatgcggagagcggacagtatctgtcgccggacccgatagggttacttggt
ggtctgaggccgcaggggtatgtcgcaaatcctttagaattctgtgacccgttggggctg
gcacggtctgtttgtcaggctcgctatgaaaggtataaagactatcgctcacaaggatat
tcggctgaagaggctgcgaaattatccaaaggagctaaccctgcaatgattacccctggc
tctcttcctgctgcggaagaagcagcagtaaatagaacgctaggacatattgataacgga
gataaacctgctggagctcttgggaaaaaatggggaactacatttaaaaatcatcaaggt
gaattgcctggtggaagtggtgcaaattctccttatagcgagtatcgagtagatcccggc
cctggtgtaagtggagcaggagctagacgagttgttgtcaacaataatacgggtgaaaca
tattatacatggacgcattacggtgattcaggaaacccatcttttgtgaggattagatga
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