KEGG   Candidatus Protochlamydia amoebophila: pc1833Help
Entry
pc1833            CDS       T00172                                 

Definition
(GenBank) conserved hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcu  Candidatus Protochlamydia amoebophila
Brite
KEGG Orthology (KO) [BR:pcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    pc1833
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcu03400]
    pc1833
Enzymes [BR:pcu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     pc1833
DNA repair and recombination proteins [BR:pcu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     pc1833
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: CAF24557
UniProt: Q6MA42
LinkDB All DBs
Position
2189234..2191720
Genome map
AA seq 828 aa AA seqDB search
MELKKYLSKRNFNETTEPHEKTKEHSSQSLLFVVQMHNASHLHYDFRLELDGVLKSWAIP
KGPSLNPNDKRLAIQVEDHPYSYHNFEGTIPKGNYGAGEVIVWDKGNYSALGAKSQKESE
QFIRQGLKKGHLKFVLNGHKLKGEFSLIRFQGDDKQWLLIKKSDVYASQVSILEKNESVL
SQRIISLDPKKTGKNPKKTRNSILIQKEIQKTTMPQIIKPMLATLVDKPFDHPDWLFEIK
WDGYRALAQIHNQSVFLWSRNHLSFNSRFDPIVKALNEMTVDAYLDGEIVVLNENGQPSF
QLVQNYLKNQEGFLVYYVFDLLYLKNNDLRELTLLQRKELLKQILPKNSRIRFCEHLIQE
GKAFFKVASQAGFEGIVAKRIDSTYQSTRSKKWLKIKTHQRQEAIICGFTTPRGSREHFG
SLLLGVYKDNELLYVGHTGSGFDQKSLTYVRDLLKPQETCPFSFPPKLHQPTTWVKPELV
CEIQFAEWTKEKIMRQAIFIDLREDKKKQEVVLEEEVKVKKILQETSPISKQQKIKPSIH
TELSFTHLDKIYWPQEGYTKGDLLEYYRSISPLILPYLKDRPETLHRYPNGIGQPGFYQK
DLLHAPNWVQIETISHEEREVHYIIINDEQSLLYVINLGCIELNPFNVRRQSLHYPDYLI
LDLDPEGISFDYVIEVAQGIHHILDPLDIPHVCKTSGATGLHIYIPMGTRYTFEETTQFG
KLIAHLAHEKMPDLTSLERNPKNRQNKVYLDYLQNNFGQTVVAPYSVRPKPEAPISTPLS
WKEVKVGLRPTDFTIKNCLKRFQKVGDLFKPILGKGINLEKILKQLDD
NT seq 2487 nt NT seq  +upstreamnt  +downstreamnt
atggaattaaaaaagtaccttagtaaaagaaattttaacgagacaactgaaccacacgaa
aagactaaagaacattcctctcaaagccttttgttcgtcgtgcaaatgcacaacgcctct
catttacattatgacttccgattagaattagacggggttcttaaaagttgggctattcct
aaagggccctctctcaatcccaatgataaacgtttagccattcaagttgaagatcatcct
tattcttatcataattttgagggaactattccaaaaggaaattatggagcaggagaagtt
atcgtttgggataaaggtaattattcagctctaggagcaaagtcccaaaaagagtccgaa
caattcataagacaaggtttaaaaaaaggacatttaaaatttgttttaaatgggcacaaa
cttaaaggcgaattttctcttattcgatttcaaggcgatgacaagcaatggttactcatt
aagaaaagtgatgtgtatgcttctcaagtatccattctcgaaaaaaatgaatctgttttg
tctcaacgaatcatttctctagatccaaaaaaaactggtaaaaatcccaaaaaaacgcgt
aattcgatccttattcaaaaagaaatccaaaaaacgaccatgccacaaataatcaaaccc
atgcttgccactttggtcgataaaccttttgaccatcccgactggctatttgaaattaag
tgggatggatacagggcgctagctcaaattcacaaccaatccgtttttttatggtctcgt
aaccatctttcatttaactcacgatttgatccgattgtaaaagccttaaatgaaatgaca
gtcgatgcttatttagatggagaaattgtcgttttaaatgaaaatggacaaccgagcttt
caactcgttcaaaattacctaaaaaatcaagaaggatttttagtttactacgtgttcgat
cttctctacctaaaaaataacgatttacgagaattaacccttttacagcggaaagagctg
ctcaaacaaattctaccaaaaaattcccgcattcgtttttgtgaacatttgattcaagaa
ggaaaagccttttttaaagtggcttctcaagctggatttgaaggaattgtagctaaaaga
attgatagcacctaccaatccacgcgcagtaaaaaatggctaaaaattaaaactcatcaa
agacaagaagcaattatttgtggcttcacaactccgagaggttccagagagcatttcgga
tctctacttttaggagtctacaaagataatgaattgctttatgtgggccatacaggcagt
ggattcgatcaaaaatcgttaacttatgtgcgtgacctcttaaaacctcaagaaacctgc
cctttttcttttcctcccaaactccatcaaccaaccacgtgggtaaaacctgagctagtt
tgcgaaatccaatttgctgaatggacaaaagaaaaaatcatgagacaagcgatttttatt
gatcttcgcgaagataaaaaaaaacaagaagttgtgctagaagaggaagtaaaagtcaaa
aaaattttacaagaaacttctcccatttctaaacaacaaaaaataaaacctagcatccat
acggaattatcttttacgcatttagataaaatttattggccccaagaaggatatacaaaa
ggagatttgcttgagtactatcgatcgatatctcctttaattttgccctatttaaaagat
cggccagaaacgctccatcgttatccaaatggaattggtcagcctggtttttatcaaaaa
gatctccttcatgcacccaattgggttcaaatagaaaccatctctcacgaagaaagagag
gtacactatattatcatcaatgatgagcaaagtttactctatgtaatcaatttaggatgt
attgaattaaatccctttaatgttcgaaggcaatctttgcattatccagattatttaatc
cttgatttggatcctgaaggcatttcatttgattatgtcattgaagtcgctcaaggaatt
caccacatcttggatccgctagacatccctcacgtgtgcaaaacctctggggctaccgga
ctccatatttatattccgatggggactcgttatacttttgaagaaaccacacaatttggc
aaattgatcgctcacttagctcatgaaaaaatgccagatctcacttctttagaaagaaac
cctaaaaatagacaaaacaaagtctaccttgattatttacaaaacaattttgggcaaact
gtcgttgctccttattccgttcgtcccaaacctgaagcccctatctctacccctttgtca
tggaaagaagtgaaagttggtcttcgcccaacagattttactataaaaaattgtttaaaa
agatttcaaaaagtaggtgatttattcaaaccaattcttggtaaaggaataaatttggaa
aaaattctcaaacaactagatgattaa

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