Plasmodium cynomolgi: PCYB_083150
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Entry
PCYB_083150 CDS
T02490
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcy
Plasmodium cynomolgi
Pathway
pcy03020
RNA polymerase
pcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCYB_083150
09124 Replication and repair
03420 Nucleotide excision repair
PCYB_083150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcy03021
]
PCYB_083150
03400 DNA repair and recombination proteins [BR:
pcy03400
]
PCYB_083150
Enzymes [BR:
pcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCYB_083150
Transcription machinery [BR:
pcy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PCYB_083150
DNA repair and recombination proteins [BR:
pcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PCYB_083150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-GeneID:
14692504
NCBI-ProteinID:
XP_004222101
UniProt:
K6USH1
LinkDB
All DBs
Position
8:complement(1018429..1025625)
Genome browser
AA seq
2270 aa
AA seq
DB search
MTVDLNVPYSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLYKDGLPREGGLNDIRMG
TIDYKTLCGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTTN
SKVKYIEKIKVNSLRLKRLSEVCQGIKVCDHSSPQEEDTLHLNDNSLDNFYNNNLSNLNM
NQQMLLNPNSYSNIFEMVNKEDVDCGCVQPKYSREGPNMFIQFLHSSDEDIDESKRKLSA
EEALEILKKIRKEEMPILGFNSDRCIPASLILTFIPIPPPCARPYVQYGNQRSEDDLTLK
LLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRSKKPIKAI
RTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNY
DDLKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFN
RQPSLHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLM
IVQKQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIWIPYWNHVIPTPAI
MKPKALWTGKQIFSMLLQFEDLERLNDPLGNAKMMGATHGSGFRIEDEMGRGNNSSGAQL
HPHSPLAIGDTINSNVKNQPIGNEGTGTNNADGTLKGGVSGWGRNVKINLMRDSSTSCKD
DNPYCSVNDGKVIIKNNELLCGIICKRTVGSSSGSLIHILWHEMGPDKTKDFISALQKVT
NNWLEYIGFTVSCSDIIASNKVLDKVKDILSKSKKEVSKIVKKAQRGELECQPGKSLYES
FETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGK
RIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSE
TGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDNKEV
KKLYKYNFDDDEDDDHNDSYGKDFYLDSGQNRKSSYIDYNKQNVLNQEFEELLKCKNNIC
KEIFPDGDVRQHLPINMNRLIEFAKSQFPFVPVIGSKVKDPISANRMRPKMSSTKRRSKK
GKKTRSRDRTKAAANAALEDPNDELQNSEFMSEIKKEYETNDLANAMKGQGAYSGFEPFD
EDLAEGEHRDEGSGDEGSGDEGSGDEGSGEGSGEGSGESGGESDGESHGEDQSFVNPVDI
VHKVNRFLEKLVIIKQINSNDTLSLEAQNNATVLLKAHLRTYLNSKLLTQTHKISMKGID
WLLQEIEKNFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKE
LINIVKNVKTPSTTIYLDDVVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNTTTTIL
EEDKMWVDEFYEFPDEDDTQYTLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSVFSSDEL
DIIYTDDNSEDLILRIRVKYLNGEYNFLNDDADQAQEDEYEEEEEEEEKYNNIGNTFKTK
KNVEADGNDGTQNKKNDIEDNQSVSSNRSRQNSINSENRFGSASGSASGTDIEDGDGKGN
HNRDEAAAKDKTSKGKNVAKVKKLKEEGANRTDSNYAEGYEETDLFAKGEGKNGESGGAG
GGGSAGGSGVGVGSGIGIGSGRGSGTAEDMFGKSNLKNAEEDAHAAKGRSSISGTNAGGG
TTSGNAPSGNNTSSQDMNTMRNINNLSNPIYMKEDTEDTFLKKLMEQCLSTLKLRGIENI
TKVYMREESKITYDSNNGKFVRSSHWVLDTDGCNLEHIFCASHVDYKKTISNDIVEIFEV
LGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQRGYLMSITRHGINRVDRGPLV
KCSFEETVEILLEAAAFAQVDNLKGITENIMLGQLCKIGTGVFDIIIDNQKLSDANQNLE
TMMDITSAGFTTPDSHHGITPDGLQSPVAINTLNSPLPFSPTYNVNLLSPTVPIDSVNGI
LSPQCLQNYGDGSSGGENIMSPSKNDFNNLDTLKLGGKFSPTQSPRSPTSVIHSPFSPFD
NHNQQALDPSMLFSPKNNNTSNSNSMTMMNYNVFSPKANLNSIQSPAMLYSPNRALDIFS
PKQQTQNNIYSPSYSPTSPTYHLSNNANAGGSSGLNDTKAFYSPTSPKNQLSEMNPNMMK
YHSVSPVQVKQHIQDVSVFSPIQQANAEGAQNDDPFSPMPYNMEEDEMEQ
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcgacctgaacgtgccctactcggcgtgcgagctgaagagggtgaaacgcctc
gagttgggtgtgctggatccagaaattataaaaaaaataggcgtgtgcgaaattgtaaat
gtagatctatacaaagatggacttccaagggaaggaggtctaaacgatatccgaatggga
accatagactacaaaacgttgtgtgggacatgtaacatgaacgtgaagtattgccctggc
cactttggctacatcgaactagccaaacctatgtaccactacggatttatgaatgtcgta
ttgaatgtattaagatgtgtatgctaccactgtggaaggctattgtgtaatacgactaac
tccaaagtgaaatacattgaaaaaattaaggtaaatagtttgagactgaagagattgtca
gaggtatgtcaaggaatcaaagtatgtgatcactcctctccacaagaagaagatactcta
catctgaatgacaattcactggataatttttacaataacaatttgagtaacttaaatatg
aatcaacaaatgcttttaaaccctaacagctacagtaatatcttcgaaatggttaataaa
gaagacgtagactgtggttgtgtacagcccaaatactcaagggaaggaccaaatatgttt
attcagtttttacattctagtgatgaagacatagatgagagtaaaagaaaattaagtgca
gaagaagcgctagaaattttgaagaaaattaggaaagaagaaatgcctattcttggattc
aattcggatagatgtattcctgcatcgttaattttaacatttattcctatccctcctcct
tgtgctagaccatatgtacagtatggtaaccagaggagtgaggacgacttgacattgaaa
ctgctagacattgtaaaaacgaacatacagttgaagagacaaacagataggggggctaaa
tctcacgtgctgcaggatctgtgtgctctcttacagtttcacattaccaccttgtttgat
aatgacattcctggaatgcccatagcgaccacacgttcgaagaaaccaattaaagccata
cggaccaggttgaaggggaaggaagggaggctccgaggaaatttaatgggaaaacgtgtc
gacttctcagccagaacagtaattacaggagatccaaatttaaatattgactacatagga
gtacccaaatcagtcgccatgacgttaacattctgcgaaactgtgactccacttaattac
gatgatttgaagaaactcgtggaaagaggtccatacgaatggccaggagcgaaatatatc
atcagggacaacggaaccaagtatgaccttagacatgtaagaaaaaattcagagagagaa
ttagaatatggttacaaagtagaacgacacatgacagatgaagattatatcctctttaat
cgacaaccgtctcttcacaaaatgagtattatgggacataaggcgaaaatattgccatac
tctacgttcaggctaaacttagctgttacttctccgtacaatgccgattttgatggggac
gaaatgaatttgcaccttgcacagtctcatgagactaggtcagaaattaagcacctcatg
attgtgcagaagcagatcgtctctccgcagggtaacaaacccgttatgggaattgtgcag
gactccctcttggccataagaaaatttacaaggcgagataacttcctcacaaaggaagaa
gtaatgtctttgctcatttggatcccctactggaatcatgtgatacctactccagccatt
atgaagccgaaggccctttggacaggaaagcaaattttctcgatgcttctccaatttgaa
gatttagaaaggctcaacgatccattaggaaatgccaaaatgatgggagctacccatggg
agcggattcagaatagaagacgaaatgggtcgaggcaacaacagtagtggtgcacaacta
catccacatagccccttagccattggagacaccataaacagtaatgtaaaaaatcaaccc
attggaaatgaaggaaccggaacgaataatgcagatggtacattaaaaggaggagtaagc
ggatgggggaggaatgtaaaaattaatttgatgagagattcctctacctcgtgtaaggat
gacaatccgtactgctccgtcaacgatggaaaggtgatcataaaaaataacgaactttta
tgtggaatcatatgcaaacgtacagtgggttcttctagcggatcgttgattcatattttg
tggcacgaaatgggtccagataaaaccaaagatttcatttccgccctgcagaaggttact
aacaattggttagaatacatcggattcacagtgagctgctctgatattatagctagcaat
aaggtcctcgataaggtaaaagatattctaagtaagtccaaaaaggaggtgtccaaaatt
gtgaagaaagcacagagaggagagttggaatgtcaaccgggtaagtccctctatgaatca
ttcgaaacgagagtaaataacgaactaaattgtgctcgtgaaatggcaggaaaagtagcc
tcagaaagcttagatgaaagaaataatatcttcagtatggtggctagtggctccaaggga
tccattatcaatatttctcaaattatatcgtgtgttggtcaacaaaatgtggaaggaaag
agaattccctttggatttaatcacagatccttaccccattttattaaatttgattatggt
ccagaaagtagaggttttgtttctaattcgtatttaagtggactcactccacaggaggtc
ttctttcatgccatgggaggaagagaaggtattatcgacacagcatgtaagacgtccgaa
acggggtacatacaaaggagactaatcaaagccatggaagacgtgatggtgcagtacgat
cgaactgttaggaactcctatggagatattattcagtttctctatggggaggatggaatg
gctggagagtatatagaagatcaaattattgatctgatgaaactagacaataaggaagtg
aaaaaattatacaagtacaactttgacgatgatgaggatgacgatcataacgatagttac
gggaaggacttctacctggacagtggacaaaacaggaagagctcctacattgattacaac
aagcagaatgtactaaatcaggaatttgaagagctactaaagtgtaaaaataacatttgc
aaggaaatattccctgatggagatgtaaggcagcacttacccatcaacatgaatcgactt
atcgaattcgccaaatcacagttcccctttgttcctgttatcggtagcaaagtgaaggat
cccattagtgctaataggatgaggcctaagatgagcagcacaaagaggaggtccaaaaag
gggaagaagacccggtcacgggataggacaaaagcggctgctaacgcggcgttggaagac
ccgaatgacgaactgcagaatagcgagttcatgtcggagatcaagaaggagtacgaaacg
aacgatctcgccaacgccatgaagggccagggcgcgtacagcggcttcgagcccttcgac
gaggacctcgcggaaggggagcatcgcgacgagggaagcggtgacgagggaagtggcgac
gagggaagcggcgacgagggaagcggcgaaggaagcggcgaaggaagcggcgaaagtggc
ggcgagagcgacggggaaagccacggagaggaccagtccttcgtcaaccccgtagacatc
gtgcacaaagtcaaccgctttctagaaaagcttgtcattatcaaacaaatcaacagcaac
gataccctctcgctggaggcccagaacaacgccacggtgctactgaaagcacatttgaga
acctacttaaattcgaagctcctgactcagactcataagatcagtatgaaaggaatcgat
tggcttctgcaagaaattgaaaagaatttctacaagtcattgtgtcaccctggagaatgt
gtaggcgccttggcagcgcagtcaattggagaacccgcaacgcagatgacgctgaataca
tttcacttcgcaggagtgggatccaaaaacgtaacgttaggtgtgccaagattgaaggag
ttaattaacattgtgaagaatgtaaagactccatctacgaccatttatcttgacgacgtc
gtgtccaatgatcagcaaaaggcgaaagatattttaaccaaactagagtacacaacattg
aagcaactaacatcacatgctcaaattatttacgaccccaatactacaactactatttta
gaagaagataaaatgtgggtcgacgagttttatgaatttccagatgaagatgacacacag
tatactttaggagaatgggttctacggattcagctaaccaatattcatgtgaatgaaaaa
aagctaactatgaaggaaattgtctacattatttattcagtcttctccagtgacgagtta
gacatcatctacacggatgataattcggaagacctaattttaagaattagggttaaatac
ctaaatggggaatacaactttcttaatgatgatgcagaccaggcacaggaggatgaatac
gaagaggaggaagaggaggaggaaaaatacaacaatattgggaacaccttcaagacgaag
aagaatgttgaggcggatggaaatgacgggacacagaataagaaaaatgatatagaggac
aaccaaagcgtcagcagcaaccgctcgaggcaaaacagcataaacagtgagaaccgattt
ggtagcgcgagtggcagtgcgagtggcacggacattgaggatggtgatggaaaggggaac
cacaatagggacgaagcagcagcgaaggataaaacgagtaagggaaaaaacgtggcgaaa
gtgaaaaaactgaaggaggaaggtgccaaccgaacggatagcaactatgctgaggggtac
gaagaaacggatttgttcgccaaaggggaaggcaaaaatggagaaagtggaggcgcaggt
ggaggcggaagtgcaggcggaagtggagtcggagtcggaagtggaatcggcatcggaagt
ggaaggggatccggcacagcagaggacatgttcgggaagtccaacctaaaaaacgcagaa
gaagatgcacacgccgcgaaggggagaagcagcatcagtggcaccaacgcaggtggaggg
accaccagcggaaacgcccccagtggaaataatacaagcagtcaagatatgaataccatg
cggaacataaataatttgagcaacccgatttacatgaaggaagatacagaggataccttt
ttaaaaaagctgatggagcaatgtctgtcgacattaaagttaaggggaatagaaaatatt
accaaagtgtatatgagagaagagtctaaaataacgtacgactcaaacaatggcaaattt
gtgaggagttcccattgggtcttggacacagatggatgtaacctagagcatatcttctgt
gcttctcatgtggattataaaaagaccatttcgaatgacatagtggaaatatttgaagtt
ttaggaatcgaggcagtgagaagagctctcctaaaggaattgaggactgttatttctttt
gatagctcatatgttaactacaggcatctgtccatcctatgtgacgtcatgactcagaga
ggttacctaatgtctataacgagacatggaatcaatcgagtggatagaggcccactagtc
aagtgcagctttgaagaaacggtggaaatactcctagaagcagctgcctttgctcaggtg
gataatctcaaaggaataacggagaatatcatgctgggccaattatgcaaaataggcacc
ggcgtttttgatatcattatagataaccaaaagctcagcgatgcgaatcagaatttagag
accatgatggatattaccagtgctggatttactactccagatagtcaccatggaatcacc
ccggatgggctacaatctccagtagcaatcaacacgctaaattcccctctgccgttttct
ccaacgtataatgttaatttgctgtcccccacagttcccatcgacagtgtcaacggtatt
ttatctccccagtgtctgcagaattatggagatggaagtagtggaggtgaaaatattatg
tccccatccaaaaatgactttaacaatttagacacgttaaaattgggtgggaaattctct
cctacgcaatcaccaaggtcacccacatcagttatccactctcccttctctccttttgat
aatcacaaccaacaagcactcgatcccagcatgttattctctccaaagaataacaacacc
tccaacagcaatagtatgaccatgatgaattacaatgtgttttccccgaaagcaaatttg
aatagcatacaatctcctgccatgttgtattctcctaatcgcgccctagatatattttcc
cccaagcaacagacacagaataatatttactctccttcctactcccccacttcccccact
tatcacttgtccaacaatgcgaacgctggtggctcctccggtttgaatgacacaaaggct
ttttactctccgacttctccaaaaaatcaactgagcgagatgaaccccaatatgatgaag
taccacagtgtctcgcccgtgcaggtcaagcaacacatccaggacgtcagcgtcttttcg
cccatccagcaggccaatgccgagggggcgcagaacgacgaccccttctccccgatgccc
tacaacatggaggaggacgaaatggagcagtga
DBGET
integrated database retrieval system
