KEGG   Phoenix dactylifera (date palm): 103712335Help
Entry
103712335         CDS       T03274                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03030  DNA replication
pda03410  Base excision repair
pda03420  Nucleotide excision repair
pda03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103712335
   03410 Base excision repair
    103712335
   03420 Nucleotide excision repair
    103712335
   03430 Mismatch repair
    103712335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pda03032]
    103712335
   03400 DNA repair and recombination proteins [BR:pda03400]
    103712335
Enzymes [BR:pda01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103712335
    6.5.1.6  DNA ligase (ATP or NAD+)
     103712335
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103712335
DNA replication proteins [BR:pda03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103712335
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103712335
DNA repair and recombination proteins [BR:pda03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103712335
   NER (nucleotide excision repair)
    Other NER factors
     103712335
   MMR (mismatch exicision repair)
    Other MMR factors
     103712335
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 103712335
NCBI-ProteinID: XP_008797049
UniProt: A0A2H3YD69
LinkDB All DBs
Position
Un
AA seq 747 aa AA seqDB search
MLLRAPSLSFLNFFPPPPPPFLSRLLFSKSKTLNPSALLRLSSMSARRTVAEALMGSARA
AAAAARKKAKHDKPPSPSPSPPPEPSPPRPKPAKTLRTQPDEKKKNAALELRKKCTDFNP
GAAAYWKDGEPVPFSFLVHAWELIGNESGRIAMTEILCNAFRTVIATTPGDLLATVYLTA
NKIAPPHVGLELGIGEASLIKALAEAYGRKEEHVKKQNSELGDLGLVAKASRSTQKLMFQ
PKPLTINKVFNTFLAIAKESGANSQDKKKNHIKGLLVAATECEPLYITRLLQSKMRIGLA
EKTVLVALGHAAAYSETCPRPPLQTQSPLEKAAKIIKQVYSVLPSYDKIVPALLQVGVWK
LPEACNFTLGVPIGPMLAKPTKAVSEIIDKFQGMEFTCEYKYDGERAQIHYMEDGSVEIY
SRNAERNTGKYPDVVSSISRFKKETVKSFVLDCEIVAYDHEKQKILPFQVLSTRARKGVI
LSDIKVTVCTFGFDILYKNGQPLLQEQLKVRRQHLYSSFEEVPGVFQFATAIITNDVEEI
QKFLEAAVNSSCEGLIIKTLDKDATYEPSKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHG
RGKRTGVYGSFLLACYDEHNEEYQTICNIGTGFSESQLEERSASLRYKAIPTPKPYYRYA
DTVNPDVWFEPAEVWEVKAADLSISPVHRAASGIVDPNKGISLRFPRLVRVRDDKSPEQA
TTSDQVADMYRAQKINHTNNHEEEGDD
NT seq 2244 nt NT seq  +upstreamnt  +downstreamnt
atgctgttgagagctccgagtctatcattcctcaattttttccctcccccaccgcctccc
ttccttagccgcctccttttctccaaatccaaaaccctcaacccctccgccctcctccgc
ctctcctccatgtccgcccgccggaccgttgccgaggccctcatgggcagcgcccgcgcc
gccgccgccgccgcccgaaagaaggccaagcatgacaaacccccatccccatccccatcc
ccgcccccggaaccctcccctcctcgcccgaagcccgccaaaaccctacgcacccaaccg
gacgagaagaagaagaacgccgccctcgagctccggaagaagtgcaccgatttcaacccc
ggagccgccgcttactggaaggacggcgagccagtcccgttctcgttcctcgtgcacgcc
tgggagctgatcggaaatgagtcgggccggattgccatgacggagatcctctgcaatgcc
tttcggacggtgatcgccaccacacccggggatcttcttgccaccgtttacctcacggcg
aacaagattgctccgccccacgtgggtcttgagcttggaattggagaagcatccctcatc
aaggcgcttgccgaggcttatggtcggaaggaggagcatgtgaagaagcaaaacagcgaa
ttgggtgacttgggtcttgttgcaaaagcaagccgttcaactcaaaagttgatgttccag
cctaaacctttgacaattaacaaggttttcaatacattcctggctattgcaaaggaatct
ggggcaaatagtcaggacaagaaaaagaatcatataaagggacttctggttgcagcaact
gaatgtgaacctctgtatataactcgtcttctacagtcaaaaatgcgtattggtttggcg
gagaaaactgtccttgttgctcttgggcatgcagctgcatattctgaaacatgtccaagg
ccgcctctgcaaactcaatctccccttgagaaggctgcaaaaattatcaaacaagtatat
tctgtacttccgagctatgacaaaattgtccctgctcttcttcaagttggggtatggaaa
cttccagaggcatgcaattttactttaggtgtgcctattggacctatgttagcaaaacca
acgaaggccgtatcggagatcattgacaaattccagggaatggagttcacctgtgagtac
aaatatgatggtgaacgtgcccagatacactacatggaggatggatcagtcgagatatac
agtcgtaatgcggaacgaaatactgggaagtacccggatgttgtcagttctatctcaaga
ttcaaaaaggaaactgtaaaatcatttgtgctggattgtgaaattgttgcttatgaccat
gagaagcagaagatcttacctttccaggtcctcagcactcgtgctcgtaagggtgtgatc
ttaagtgatataaaagtcacagtctgcacctttggctttgatattctgtataaaaatggc
caacctcttctccaggagcaactcaaagttcgtcgacagcatctctacagttcttttgag
gaagtgccaggagtattccagtttgcaactgccataataacaaatgacgtcgaggaaata
cagaaattccttgaagcagctgtcaactccagttgtgaaggattgattatcaaaacattg
gataaagatgccacatatgagccttctaagcggtctaacaactggctgaagttaaagaaa
gattacatggacagcattggtgactcactagatttggtgcctattgctgcattccatggt
cgtggaaaacgtacaggggtttatggttcgtttcttcttgcttgctatgatgaacacaat
gaagaataccaaaccatctgtaatataggtactggattttctgagtcacaacttgaagag
cggtctgcaagtcttcgctataaagcgattcctacaccaaagccatattatcgatatgct
gatacagtgaatccggatgtatggtttgagccagcagaggtttgggaggtgaaagcggca
gatttgagcatcagtcctgttcatcgtgctgctagtggcatagttgatccaaataagggt
atttctcttcgatttcctcgtttagtccgtgttcgagatgacaaaagccctgaacaagcc
acaacgtctgatcaggttgctgacatgtatcgtgctcaaaagattaaccacacaaataac
catgaggaagagggtgatgactaa

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