Phoenix dactylifera (date palm): 103718915
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Entry
103718915 CDS
T03274
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03020
RNA polymerase
pda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103718915
09124 Replication and repair
03420 Nucleotide excision repair
103718915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103718915
03400 DNA repair and recombination proteins [BR:
pda03400
]
103718915
Enzymes [BR:
pda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103718915
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103718915
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103718915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
103718915
NCBI-ProteinID:
XP_008806151
UniProt:
A0A8B7CTH5
LinkDB
All DBs
Position
Unknown
AA seq
1842 aa
AA seq
DB search
MDMRFPYSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHGETMERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDTR
FKQALKIRNPKHRLKRIYDACKTKKKCAGGDDIDVQAQQDSEEPIKKSRGGCGAQQPNIT
IDGMKMIAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRISDEDCLLLGLDPKYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYLKKSSDHHLELGYKVERHLMDGDYVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI
NLIRTSAWHSEAETGFITPGDTLVRIEKGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDKGFKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRY
QLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP
GEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKSYYEMPDED
IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFADDLTCIFNDDNADKLILRIRI
MNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDDNEGFK
ADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
YLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPISGT
PYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKY
SPSLAYSPSSPRLSPSSPYSQSSPNYSPTSPSYSPTSPSYSPPSPTYSPTSPYNSGPGPD
YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQMSNKDEESTR
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgcttcccctactctccggcggaggtcgccaaggtccgctgcgtccagttc
ggcatcctcagccccgatgagatccggcaaatgtcggtggtgcagatcgagcacggcgag
acgatggagcgggggaagccgaagcccggggggctaagcgacccccggctcgggaccatc
gatcggaagatgaagtgcgagacttgcatggccaacatggccgagtgccccggccacttt
ggccatcttgagctcgcgaagcctatgttccatattggatttctcaagactgtgcttgct
atcatgcggtgcgtctgcttcaattgctccaagatcctggccgatgaggatgatactcga
ttcaaacaagctttgaaaattagaaacccaaagcataggttgaaaagaatttatgatgct
tgcaaaaccaagaagaaatgtgctggtggtgatgatatcgacgtccaagctcaacaagat
tcagaagaaccaataaagaagagccgaggtggttgtggagctcaacagccaaatattacc
atagatggtatgaaaatgattgcagaatacaaagctccaaagaagaaatcggatgaccaa
gaacagcttcctgaacctgttgaaagaaagcaagtcctttctgcagagagggttcttagc
gttctcaagaggataagtgatgaggactgtctgttattgggtttggaccctaaatatgcc
cgtccagattggatgatattacaagttcttccaattcccccacctccagtaagaccttct
gtgatgatggatacctcttctaggagtgaggatgatctgactcatcaactggctatgata
atcagacataatgagaacttgaggcggcaagagaggaatggagctccagctcacatcatc
acagagtttgcccaattattgcaattccacattgctacatattttgataacgaccttcct
ggtcagccaagggctacacagcgatctggacgacccatcaaatctatatgcagtagactc
aaggctaaagaaggtcgaattagaggtaacttgatgggaaagcgtgttgatttttcagcc
cgaacggtcatcactcctgacccaacaataaacattgatgaactgggagtaccttggagc
atagctctgaatctaacatacccagaaactgtgactccatataacattgaaagactgaag
gaacttgtagaatatgggcctcatcctccccctggtaagactggtgcaaaatacattata
agggaagacggccagaggcttgatcttcgctacttgaagaaaagtagtgatcaccatctg
gagcttggatacaaggtggagcgacacttgatggatggggattatgttcttttcaatcgg
cagcctagtcttcataaaatgtccatcatgggtcaccgaattaaaatcatgccatactcg
acttttcgcttaaacttatctgtgacttctccatacaatgctgattttgatggtgatgag
atgaacatgcatgttccccaatcatttgagactagagcagaagtattggaactgatgatg
gtacctaaatgtattgtctcacctcaatctaatcggcctgtcatgggcattgtccaggat
acgcttctaggatgtcgcaagattactaaaagagatacatttatagaaaaggatgttttt
atgaacattctaatgtggtgggaagattttgatgggaagatacctgctccagccattttg
aaacccaggcctctatggaccggaaaacaggtgttcaaccttatcattccaaagcaaata
aatcttattaggacttcagcttggcactccgaagcagaaacaggatttatcactccaggg
gatactttagttcgtatagagaaaggggagcttctgtcgggcaccctgtgcaaaagaact
cttggaacatctactggaagtcttatccatgtgatctgggaagaggtcggtccagatgca
gctcgcaagtttttgggccatacacagtggctcgtaaactattggcttttgcagaatggt
tttagtattggaattggggatacaatcgcagatgcagcaactatggagaaaattaatgaa
acaatatcaaaagctaaaaatgatgttaaagaacttatcaagctggcacaagaaaagcag
ttggaagccgagcctggcagaactatgatggaatcatttgagaacagagtaaaccaggtg
ttgaataaggctcgtgatgatgcagggagtagtgctcagaagagcttatctgagagtaac
aatctgaaggcaatggttaccgcaggatcaaagggtagttttattaacatttctcagatg
actgcttgtgtgggacagcagaatgttgagggcaaacggattccttatgggttcattgat
cgaacattacctcacttcacgaaagatgactatggacctgaaagtcgtggttttgtggag
aactcctaccttcgtgggttaacaccgcaggaattcttcttccacgctatgggtggtagg
gaaggtttaattgatactgctgtgaaaacttctgagactggatatattcagcggcgcctt
gtgaaggctatggaggacattatggtcaaatatgatggtactgttagaaattctctcggg
gatgttatacagttcctatatggggaggatggtatggacgctgtctggattgaatcacag
aagttggattccttgaagatgaaaaagtcagagtttgacaagggttttaagtatgagatt
gatgatgacaattggaatcctagctacatgttaccggagcatgttgaggatctgaaaacc
atccgtgagttcagaaatgtgtttgatgctgaggttcagaaattagaagcagaccgttac
cagcttggtacagaaattgcgactactggtgataacacatggcctttgcctgttaacctc
aagagactaatctggaatgcacaaaagacatttaagattgatttgagaaggccatcagat
atgcatccaatggagattgtagaagctattgataagcttcaagaaaggctgaaagttgtc
cctggtgatgattttcttagcatggaagctcagaaaaatgcaactttgtttttcaatatc
ttacttcgtagcacatttgccagcaagcgggtgttgaaagagtacaggctcactcgcgaa
gcatttgagtgggttattggtgaaatagagtcccgtttcctccagtcactggtagcacca
ggtgagatgattggttgcatagctgcccaatccatcggtgaaccagctactcagatgacc
cttaatactttccactatgctggtgttagtgcaaagaatgttactcttggtgttcccagg
ttgagggaaattattaatgttgccaagaaaatcaaaactccttcactgtctgtttacttg
aagcctgaagtcaacaaaaagaaagaactggccaagaatgttcagtgtgctttggagtac
actacattgcgaagtgtaacgcatgcaactgagatatggtatgatcctgaccctatgagc
actattattgaagaagatgttgaatttgtcaagtcgtattatgaaatgccggatgaagat
attgccccagaaaagatttctccttggctgcttcgtattgaactaaatcgtgagatgatg
gttgataagaagctgagcatggcagacattgcagagaagattaatcatgagtttgccgat
gatctaacatgcatcttcaatgatgataatgctgacaaactcatacttcggatccgcatc
atgaatgacgaagctcccaagggggaattgcaagatgaatctgctgaagatgacgttttc
ctcaaaaagattgaaagtaacatgttgacagaaatggctcttcgaggcattcctgatata
aataaggtttttatcaaatcaggaaaagtcaacagatttgatgacaatgaagggttcaaa
gcagatgtggagtggatgcttgacacagaaggtgtcaatctgttggctgttatgtgtcat
gaagacgttgatgccactaggacaacaagtaaccacttgatcgaagtgattgaagttctt
ggaattgaggctgttcgacgctctcttttggatgagttgcgtgtagttatatcttttgat
ggatcttatgtgaactaccggcatttggctattctttgtgatacaatgacctatagaggt
cacttaatggccatcacccggcacggcatcaatcgtaacgatactggtccgatgatgaga
tgttcatttgaggagactgttgacatacttcttgatgcagctgtatatgctgaaacagac
taccttaggggtgttactgagaacattatgcttggtcagcttgcaccgattggtacagga
gactgtgcattgtatttgaatgatcagatgttgcaacaggcaattgaacttcagcttcct
agttacatggagggtttggatttcggaatgacgccttcacgatcgcccatctcagggacg
ccatatcatgaagggatgatgtcacctagttatttgctgagcccgaatgttcgctcttcg
ccaattacagatgctcaattttctccttatgttggtgggatggccttttctcccagttct
tcacctggctacagcccatcgtctcctggctacagcccatcttctccaggatacagtcca
acttctccgggttatagcccgacttctccaggatacagtcctacatcaccaggttatagt
cccacatccccaacatatagccccagctctcctggatatagtcctactagtcctgcttat
tctccaacaagtccatcctactctcctacttctcccagttacagccccacatccccgagc
tatagccctacatctcccacttacagtcctacttctcctagctacagccccacttccccc
agttacagtcctacttcacctagttacagccccacatctccagtctacagtcccacttct
ccggcctatagcccaacatctcctgcatacagcccaacctcaccatcatatagtccaaca
tcaccttcctacagccccacatcaccatcatatagtccaacttctccttcatacagccct
acatcacctgcttatagccccacttctcctggctacagcccaacttccccgagttatagt
cccacctccccaagctatagccctacttctccaagttataatcctccttcagcaaagtac
agcccttcgcttgcatattctccaagcagtccaaggctgtcaccatccagtccttacagc
cagtcatctccaaattacagcccaacttcaccatcatattcacctacgtctccatcatat
tcccctccaagtccaacatacagtcccaccagtccatacaattctggtccgggcccagat
tacagtccaagttctccacagtatagtccaagtgcgggctattcaccaactgcaccaggt
tactctccatcttccactagtcaatacaccccgcaaatgagcaacaaggatgaggagagc
actcggtga
DBGET
integrated database retrieval system
