Paracoccus denitrificans: Pden_2252
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Entry
Pden_2252 CDS
T00440
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pde
Paracoccus denitrificans
Pathway
pde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pden_2252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_2252
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pden_2252
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pden_2252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
nSTAND1
AAA_25
DnaJ_CXXCXGXG
BCA_ABC_TP_C
nSTAND3
AAA_21
DUF4350
Motif
Other DBs
NCBI-ProteinID:
ABL70344
UniProt:
A1B4A0
LinkDB
All DBs
Position
1:complement(2252129..2255008)
Genome browser
AA seq
959 aa
AA seq
DB search
MEQKFIEVRGAREHNLKNVDMDIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLDMMGKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAGTP
YSPATGLPIEAQQVQDMVDRVMEMPEGTRAYLLAPIVRDRKGEYKKEFLELRKQGFQRVK
VNGQFYELDEPPTLDKKFRHNIDVVVDRIVVREGMETRLADSFRTALDLADGIALLETAA
GGAGEENGAAEPERITFSENFACPVSGFTIPEIEPRLFSFNAPFGACPVCDGLGVELFFD
DRLVVPDSALSVAQGAIAPWAKSKSAYLTQTVNALARFYGFDKKTPWKDLPESVREMFLR
GSGEDEIPFRFDDAGRVYEVTRQFEGVIPNMERRLRESDSAWVREEFEKYQNNRPCGACN
GYRLKPEALAVRIAGSHIGNVTELSIREALAWIEAAPRHLTKQKNEIAAAILKEIRERLG
FLVNVGLDYLTLSRAAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLL
STLKGLRDQGNSVLVVEHDEDAIRHADYVFDIGPGAGVHGGQVVARGTPAEIAADPCSLT
GQYLSGAREIAVPPERRKGNGKAVKVVGATGNNLKNVTAEFPLGKFVCVTGVSGGGKSTL
TIETLFKTASLRLNGARQTPAPCETIRGLELLDKVIDIDQRPIGRTPRSNPATYTGAFTP
IRDWFAGLPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCETCKGKR
YNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALVEVGLGYIKVGQQATTL
SGGEAQRVKLSKELSRRATGKTLYILDEPTTGLHFEDVRKLLEVLHSLVDQGNTVVVIEH
NLDVIKTADWIIDIGPEGGDGGGRIVATGTPEQVAEVPESHTGRYLAPMLDAARSRAAE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaagttcatcgaggttcgcggcgcgcgcgagcacaatctgaaaaacgtggac
atggacattccgcgcgacaagctggtggtgatcaccggcctgtcgggctcgggcaagtcc
tctctggccttcgacaccatctatgccgaagggcagaggcgctatgtcgaaagcctgtcc
gcctatgcccggcagttcctcgacatgatgggcaagccggacgtggaccatatctcgggc
ctgtcgccggcgatctccatcgagcagaagaccacctcgaagaacccgcgctcgaccgtc
ggcacggtgaccgagatctacgattacctgcggctgttgttcgcccgcgccggcacgccc
tattcgccggcgaccggcctgcccatcgaggcgcagcaggtgcaggacatggtggaccgg
gtgatggaaatgcccgagggcacgcgcgcctacctgctggcgcccatcgtccgggaccgc
aagggcgaatacaagaaggaattccttgagctgaggaagcagggcttccagcgcgtcaag
gtgaacggccagttctacgaactggacgagccgccgaccctggacaagaagttccgccac
aatatcgacgtggtggtcgaccgcatcgtcgtgcgcgagggcatggagacgcggctggcc
gacagtttccgcaccgcgttggacctggccgacggcatcgcgttgctggagaccgccgcg
ggcggggccggcgaggaaaatggcgcggccgagcccgagcgcatcaccttcagcgagaat
ttcgcctgtccggtcagcggcttcaccatccccgaaatcgagccgcggctgttttcgttc
aacgcgcccttcggtgcctgcccggtctgcgacgggctgggggtcgagctgttcttcgac
gaccgcctggtggtgcccgattcggcgctgtcggtggcacagggggccatcgcgccctgg
gccaagtcgaaatcggcctatctgacccagaccgtcaacgcgctggccaggttctatggc
ttcgacaagaagacgccgtggaaggacctgccggaatcggtgcgcgaaatgttcctgcgc
ggctcgggcgaggacgagatcccgttccgcttcgacgatgccggccgcgtctacgaggtc
acccgccagttcgagggcgtgatcccgaacatggagcggcggctgcgcgaaagcgactcg
gcctgggtgcgcgaggaattcgagaaataccagaacaaccgcccctgcggcgcctgcaac
ggctatcggctgaagcccgaggcgctggcggtcaggatcgccggcagccatatcggcaat
gtcaccgaattgtcgatccgcgaggcgctggcctggatcgaggcggcgccccggcacctg
accaagcagaagaacgagatcgccgccgccatcctcaaggaaatccgcgaaaggctgggc
ttcctggtcaatgtcgggctggattacctgacgctttcccgcgcggcgggcacgctttcg
ggcggcgaaagccagcgtatccggctggccagccagatcggctcggggctgaccggcgtg
ctttacgtgctggacgagccctcgatcgggctgcaccagcgtgacaacgaccggctgctc
tcgacgctcaaggggctgcgcgaccagggcaattccgtgctggtggtcgaacatgacgag
gatgcgattcgccatgcggactatgtcttcgacatcggcccgggtgcgggggtgcatggc
gggcaggtcgtggcccggggcacgccggccgaaatcgccgccgatccctgcagcctgacc
ggacagtatctttcgggcgcgcgcgagatcgccgtgccgccggaacgccgcaagggcaat
ggcaaggcggtcaaggtggtcggcgccaccggcaacaacctgaagaacgtcacggccgag
tttcccctgggcaagttcgtctgcgtcaccggcgtctcgggcggcggcaaatcgaccctg
accatcgagacgctgttcaaaaccgccagcctgcgacttaatggcgcacgccagacgcct
gcaccctgcgagacgatcagggggctggaattgctggacaaggtgatcgacatcgaccag
cgccccatcggccgcacgccgcgctcgaatccggcgacctataccggcgccttcaccccc
atccgcgactggttcgccggcctgcccgaggccaaggcgcgcggctacaagcccggccgc
ttcagcttcaacgtcaagggcggccgctgcgaggcctgccagggcgacggcgtcatcaag
atcgagatgcatttcctgcccgacgtctatgtcacctgcgagacctgcaagggcaagcgc
tacaaccgcgagacgctggaggtgaccttcaagggcaagtccatcgccgacgtgctggac
atgacggtcgaggatgcgcaggaattcttcaaggcggtgccctcgatccgcgaaaagatg
gatgcgctggtcgaggttgggctgggctatatcaaggtcggccagcaggccacgacgttg
tcgggcggcgaggcgcagcgggtgaagctttccaaggaactgtcgcgccgcgccaccggc
aagacgctgtatatcctggacgaaccgacgaccgggctgcatttcgaggatgtgcgcaag
ctgttggaagtgctgcattccctggtcgaccagggcaacacggtcgtggtgatcgaacat
aacctggacgtcatcaagaccgccgactggatcatcgacatcggccccgaggggggcgac
ggcggcggccgcatcgtcgccaccggcacgcccgaacaggtggccgaggtgccggaaagc
cataccggccgctatctggcgcccatgctcgacgcggcgcgcagccgcgctgcggaatga
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