Paracoccus denitrificans: Pden_4556
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Entry
Pden_4556 CDS
T00440
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03030
DNA replication
pde03430
Mismatch repair
pde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pden_4556
03430 Mismatch repair
Pden_4556
03440 Homologous recombination
Pden_4556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pde03032
]
Pden_4556
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_4556
Enzymes [BR:
pde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pden_4556
DNA replication proteins [BR:
pde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pden_4556
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pden_4556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
DEDDh_C
PAS
Motif
Other DBs
NCBI-ProteinID:
ABL72619
UniProt:
A1BAS5
LinkDB
All DBs
Position
p1:38314..40293
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AA seq
659 aa
AA seq
DB search
MLTRLSLRARVLLIFAGLAGAVLAVLAAGLWVAGASLAGRGVPVQAMLDALALAALIVGF
GALGMIVWIWFLFDRNVARPIELLAGGLRTGQTPEIEEARYLADLGPAARDAAEARARSA
EALADAVAEHAADLQREKETLESILADIGAGAVMTDPAGRVMFYNASAAHLLPGIALDRP
IERHLPGGALEAGAARLAAGAAATDLTCLTSAGQRLWGRMRRVDGGTLLILNDRPPQHPA
PRDLLETLRRHAATLVPMLGALEGPIPPALAQAIQSEGQGLANVLRELTEAMSGDATRGG
AGLNELAAGLDLAPDQPRLVLLADAAGVNGLLRHLDRRLREQGAAPRLAAEAGAEAEASE
ARLLLLWTGAALPMDRLEAWLAEPPDPAQPELTGHEILAAHATGIWTEARDGQARLVLPL
PIAAGRPDSAGLTYDFALSRRGATSSRLADLTCVVFDTETTGLDPVADRIVQIAGLRIAR
GRLTGERFDTLVDPGRPIPPASTAVHGITDAMVAGAPDMTAALTAFHHFAEDTVLVAHNA
PFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTA
MGDARATAEAYLRLIAALEAKGLDRFEDVLAEARRHRRLVDDANKPAGDAASGSGPSAG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgcggctgtcgctgagggcccgggttctgctgatctttgccgggcttgcgggc
gccgtcctcgcggtcctggcggcggggctgtgggtggcgggggcaagcctcgcgggccgg
ggcgtcccggtccaggcgatgctggacgcgctggcgcttgcggcgctgatcgtggggttc
ggtgcgctggggatgatcgtctggatctggttcctgttcgaccgcaacgtggcccgcccg
atcgagctgctggccgggggcttgcgcaccggccagacccccgagatcgaggaggcccgc
tatcttgccgatctgggccccgccgcacgcgacgccgccgaggcgcgggcgcgttcggca
gaggcactggccgatgcggtcgccgaacatgccgccgacctgcaacgcgaaaaggagacg
ctggaatccatccttgccgatattggtgccggcgcggtgatgaccgatccggccggccgg
gtgatgttctacaatgcctccgccgcgcatcttctgcccggcatcgcgctggaccgcccc
atcgagcgccatctgcccggcggtgcgttggaggccggggcggcgcggctggcggcgggg
gcggcggcgaccgacctgacctgcctgacctcggccgggcagcggctgtgggggcgcatg
cggcgggtcgatggcggcacgctgctgatcctgaacgaccgtccgccgcagcaccccgcg
ccgcgcgacctgctggagactctgcgccgccatgccgcgaccctggtgccgatgctgggt
gcgttggagggaccgatcccgcccgcgctggcgcaggcgatccagagcgaggggcaggga
ttggccaacgtcctgcgcgaactgaccgaggcgatgagcggcgacgccacgcgcggaggg
gcggggctgaacgaactggctgccgggctggacctggcgcccgaccagccccggctggtg
ctgctggccgacgcggccggcgtgaacgggctgctgcgccatctggaccgccgcctgcgc
gagcagggtgcggccccccgccttgccgccgaggccggggccgaggccgaggcgtccgag
gcgcggctcttgctgctctggaccggggcggcgctgcccatggaccggctggaggcctgg
ctggccgagccgcccgatccggcgcagcccgaactgaccgggcacgagatcctggccgcg
catgccaccggcatctggaccgaggcgcgggacggtcaggcgcggctggtcctgccgctg
ccgatcgcggcgggccggccggacagcgccgggctgacctatgactttgccctgtcgcgg
cgcggcgcgacctcgtcgcggctggccgatctgacctgcgtggtcttcgataccgagacg
accgggcttgaccccgtcgccgaccgcatcgtgcagatcgccggtctgcgcatcgcccgc
ggccgcctgaccggcgagcgtttcgacacgctggtcgatcccggccggccgatcccgccc
gcctcgaccgccgtgcatggcatcacggatgcgatggtggccggtgcgcccgacatgacc
gcagcgctgaccgcctttcaccatttcgccgaggatacggtgctggtcgcccataacgcg
cccttcgatatgggcttcctgcgccgcgccgtgcctgagaccggggcgcatttcgacaac
caggtgctggatacggtgctgctttcggcgatgctctggggccagtcggcgccgcattcg
ctggatgcgctgaccgagcggctcggcatcgtcatcccgcccgaggcgcgccacaccgcc
atgggcgacgcccgcgccacggccgaagcctatctgcggctgatcgcggcgctggaggcc
aagggcctggatcggttcgaggacgtgctggccgaggctcgccgccaccgccgcctggtc
gatgatgcgaacaagccggcgggcgatgccgcctccggctcgggtccgtcagcaggctga
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