Paenibacillus donghaensis: B9T62_16185
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Entry
B9T62_16185 CDS
T04971
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9T62_16185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdh03019
]
B9T62_16185
Enzymes [BR:
pdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B9T62_16185
Messenger RNA biogenesis [BR:
pdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9T62_16185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASA22183
UniProt:
A0A2Z2KG60
LinkDB
All DBs
Position
complement(3613136..3614569)
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AA seq
477 aa
AA seq
DB search
MTFNELNLIPPILKALAKENYTSPTPIQEQSIPAVLAGKDLLGCAQTGTGKTAAFSLPII
QLLSQQSHKPGTMRRIRSLILTPTRELALQIADNIQAYSQFTTMRCTAIVGGVSQKSQER
ALSQGPDILIATPGRLIDLINQKRVDLQFVQILVLDEADRMLDMGFINDVKKIIAKMPAK
KQTLFFSATMPPEINKLVKTLLVDPVKVEITPVSSTVDRIEQYIYLMEDGNKQNQLNKLL
QDPSIVSALVFTRTKRGADRVTRDLTKVNVSAQAIHGNKSQNDRQNALRNFKSGATRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCETEELPFLKDI
EKLIGKSIPEIKDHAYPMKNKPQAAKSQPSKQAAGRSGSGRPAAAASKPSAGRPSSAKPT
AGGRPSAATGARSAGTASASARPSGAKQTDFRPAAAKANPSSKPKKQWFSQDRKVSK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaattgaatcttataccccctattctaaaagctctcgccaaagagaac
tatacttcgcccacgccgattcaggagcagtcgattccggctgtgctggcaggcaaggat
ctgctgggctgtgcccagacaggtacaggcaaaacggctgcattctctttaccaatcatt
cagctgctgagccagcagtcccataaaccgggcacgatgcgccgcatccgctcgctgatc
ctgacgccaacgagagaacttgcgctgcagattgccgacaacattcaagcttacagccag
ttcactacaatgcgctgtacagccatcgtaggcggtgtgtcccagaaatcacaggaacgt
gcgctgagccaagggccggatattctgattgccacaccgggccgtctgattgacctgatt
aaccagaaacgtgtagatctgcagtttgtgcaaattctcgtcctggatgaagcagaccgc
atgctggatatgggcttcatcaatgacgtgaagaagattattgccaagatgccagccaag
aaacagacgttattcttctcggcaaccatgcctccggagatcaataagctggtcaaaaca
ctgctggtagatccggtgaaggtcgaaattacacctgtatcttccaccgtggaccggatt
gagcaatatatctatctgatggaggatggcaacaagcagaaccagctgaacaagctgctg
caggatccatcgattgtttcagcgcttgtatttacccgcaccaaacgcggcgcggaccgt
gtgacccgtgatctgaccaaggtgaacgtatcagcccaggcgatccatggcaacaaatcg
cagaatgaccgccagaacgcactgcgtaatttcaagagtggagcaacccgtgtgcttgtg
gcaaccgatattgcggcacgcgggatcgatatcgatgagctgtcccatgtgattaacttc
aacctgccgaacatcccggaaacctacgtgcaccggattggacggacaggcagagcgggc
ttaagtggaacggcaatctccttctgtgagacagaggaactgccattcctgaaggatatc
gagaagctgatcggcaagagcattcccgagatcaaggaccatgcttatccgatgaaaaac
aaaccacaggctgccaaatcacagccttccaagcaggctgccggtcgatccggctccggc
agaccggcagcagccgctagcaagccgtctgcgggcagaccgtcctccgcgaagccaaca
gcaggtggaagaccttccgcagccacaggcgcgagatcagccggtacagcgtcggcatct
gccagaccttccggcgcgaagcagaccgatttcagaccggctgcagccaaggccaaccca
tcgtcgaagccgaagaaacaatggttctcccaagacagaaaagtcagtaaataa
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