Parabacteroides distasonis: BDI_2011
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Entry
BDI_2011 CDS
T00549
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BDI_2011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdi03400
]
BDI_2011
Enzymes [BR:
pdi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BDI_2011
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BDI_2011
DNA repair and recombination proteins [BR:
pdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BDI_2011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
zf-TFIIB
Prok-RING_1
zinc-ribbons_6
LysW-like_globular
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ABR43746
UniProt:
A6LDI2
LinkDB
All DBs
Position
2380124..2380957
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AA seq
277 aa
AA seq
DB search
MIEIPESATIGKQASETLKGKRIAHVIESNSPHRFTFYNGDPAEYSNRLVGRTVLGAQGY
GAFVDIFMDADTHLLIGDGTNMRYYTSAEKAPKKYQLMIVFEDDSFLAFTVSMYGSIYAF
KGEFDNPYYQGSIHKLCPLDERFDKTYFISLIGNLKKDISAKALLATEQRIPGLGNGVCQ
DILFNARISPKRKISTLSEEDIDRLFNTVKSTLEEMTRRGGRDTEKDLYGALGNYRTILS
KNTYHDPCPVCGERIQKEAYLGGSIYYCPHCQPSAAN
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgattgagattcccgaatccgccaccattggcaaacaggctagcgaaacgctaaagggt
aaacggatagcgcatgttatcgagtcgaacagtcctcaccgcttcacgttctataatggc
gatccggcggaatactccaataggctggtaggacgaacggtcctaggcgcccaaggctat
ggcgcattcgtggacatctttatggacgcagatacccacctcttaatcggagacggaacc
aatatgcgttattatacctccgcagaaaaggccccgaagaaatatcagcttatgatcgta
ttcgaggacgattcgttcctagctttcacggtttcgatgtatggttccatctacgctttc
aaaggcgagtttgacaatccctattaccaaggtagcatccataagctatgtccgttggac
gagagattcgataaaacctattttatcagtctcatcgggaatctcaagaaagatatatcc
gcaaaggcgttactcgccaccgagcaacgtattccgggcctgggcaacggagtctgccaa
gatatcttgttcaatgcccggatctccccgaaacgaaaaatatcgactttatcagaagag
gatatagaccgcctcttcaacaccgtgaaatccacgctggaagagatgactcgccgagga
ggccgggatacggagaaggatctatacggcgccttaggcaattaccgcacgatcctatcg
aagaacacctaccatgacccttgccccgtctgtggcgaacggatacagaaagaggcttac
ctcggaggcagcatttactattgcccgcattgccagcctagtgcggcaaattaa
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