Parabacteroides distasonis: BDI_2906
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Entry
BDI_2906 CDS
T00549
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
pdi
Parabacteroides distasonis
Pathway
pdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDI_2906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdi03019
]
BDI_2906
03009 Ribosome biogenesis [BR:
pdi03009
]
BDI_2906
Messenger RNA biogenesis [BR:
pdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDI_2906
Ribosome biogenesis [BR:
pdi03009
]
Prokaryotic type
rRNA helicases
BDI_2906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ABR44614
UniProt:
A6LG00
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All DBs
Position
3468400..3470232
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AA seq
610 aa
AA seq
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MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP
ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK
RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM
LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALKRLADYY
PNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATD
VAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERI
INKKFDKGKMPTGEQICEKQLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDKEDIIKR
VVSLEFNRMIDYYKDNDDIEVVDESAPRERGKRGGRGEAEEGYTRFFINFGKTDELTPPQ
LIELVNKCVPGKVRIGRIDLRDNFSFFEVEEGEANRVMDSMNGFEVDGRRISVEPAQAKG
EGGKGSRGSRGGSRSGNGFRDRRDSGRKGRDSRRESDRGDRGGRRSGRGDDKPKRKFYED
APRGKKKRSK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgaagaattaggagttgccgcaccgatattaaaggcaatccaagagatg
ggctacgaatcgcccatgcccgtacaggaagaagtgattcctttcttactgggagaagat
aacgacgtaatcgcattggcacaaacaggaaccggcaagacagccgcttacggcctgccg
atcctgcaaaagatcaatgtctctcaatatcagcctcaagcgcttatcctttgtccgaca
cgcgagctttgcctacagatagcggacgatttgaacgattattctaaatacatcgataac
ctgaaggttctccctgtatacggaggttccagtatagagagccagatcaagacactgaag
agaggcgtacacgtggtagtggctaccccgggacgtttgatcgacttgatgaaccgcaag
acggttgacttaagcaacgtaaagaacgtcattcttgatgaggcggacgagatgttgaac
atgggtttcaccgacagtatcaacgagatcttggcggctataccggaaaaccgcaatatg
ctgctcttctccgctaccatgccgaaagagattgcctctatcaccaagaaatacatgaag
gacccgaaagagatcgtcattggcaggaagaacgagggaaacaagaatatccgcgatatc
tattacatggttcgtgcgcaggataaatatctcgcgttgaaacgtctagccgattattac
ccgaacatctacggtatcatcttctgccgtacccgtaaggagacacaggagatcgccgat
aaattgattcaagacggctataacgccgactccttgcacggcgagctgagccaagcgcaa
cgtgattacgtgatgcagaagttccgtatcaagaatatccagttattggtcgctacggac
gtagccgcacgtggtttggacgtggatgacttaacccatgtaatcaattacggtctgccg
gatgaggtagaatcttatacccaccgccgcggacgtacgggccgtgcgggaaaaacgggt
atcgctatctctatctgccacgtaagggaaaaaggcaagatccgcgagatcgaacgaatc
attaacaagaaattcgataaaggcaagatgcctaccggtgagcaaatctgtgagaagcaa
ttgttcaacttggtggaccagatcgagaaagtgaaagtgaacgaggaggaaatcgctagt
ttgatgccttctatctaccgtaaattggaatggctggataaggaagatatcatcaagcgt
gtcgtatccttggagttcaaccggatgatcgactattataaagataacgatgatatcgag
gttgtagacgagagcgccccaagagaaagaggcaaacgtggtggtagaggcgaagcggaa
gaaggctacacccgtttctttatcaactttggaaagacagacgagcttacacctcctcaa
cttatagagttggttaataagtgtgtaccgggtaaggttcgtatcggtcgtatcgactta
cgtgataatttctcattcttcgaggtagaagagggagaagccaaccgtgtcatggactcg
atgaacggcttcgaggtagacggacgacgtatctccgtagaaccggcgcaagcgaaaggc
gaaggtggtaaaggcagtcgtggtagccgtggaggtagccgtagcggaaacggtttcaga
gaccgacgggatagcggtagaaaaggcagagatagccgtcgggaaagcgaccgtggagac
cgtggcggtagacgttccggccgtggcgatgacaaaccgaagcgtaaattctatgaggac
gctcctcgtggaaagaaaaaacgcagtaaataa
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