KEGG   Pseudomonas aeruginosa DK2: PADK2_12905
Entry
PADK2_12905       CDS       T02161                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pdk  Pseudomonas aeruginosa DK2
Pathway
pdk02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pdk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PADK2_12905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdk03021]
    PADK2_12905
Transcription machinery [BR:pdk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PADK2_12905
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_24 HTH_11 HTH_29 HTH_Tnp_ISL3 GerE HTH_31 HTH_3 DUF6362 Xre-like-HTH HTH_36 HTH_38 DUF134
Other DBs
NCBI-ProteinID: AFM64862
LinkDB
Position
2731305..2731823
AA seq 172 aa
MSAPILLSAHHRAMHALYSEHHGWLQNWLRGKLGCAADAADLAQDTFLRILLKRELREIG
MPRAFLRTIARGLVIDHWRREELQRAYLESIAHLPEAQAPSPEARELVLELLEEISRMLD
GLKPKVRTAFLLAQCEDLSHRQIAERMGVSQRSVERYVAEALYHCYLLRYGE
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtccgccccgatccttctcagcgcccaccatcgcgccatgcatgcgctgtacagcgag
caccatggctggttgcagaactggctgcgcggcaagctgggctgcgcggcggacgcggcg
gacctggcccaggacaccttcctgcgcatcctgctcaagcgcgaactgcgcgagatcggc
atgccgcgcgcgttcctgcggaccatcgcccgcggcctggtgatcgaccactggcgtcgc
gaggaactgcagcgcgcctacctcgaaagcatcgcccacctgcccgaggcacaggcgccg
tcgcccgaggcgcgggaactggtgctggaactgctggaggaaatctcgcggatgctcgac
gggctcaagccgaaggtccgcaccgccttcctcctggcccagtgcgaagacctcagccac
cggcagatcgccgaacgcatgggggtttcccagcgtagcgtcgagcgctacgtggccgag
gcgctgtaccactgctacctgctgcgctacggcgaatga

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