Prevotella denticola: HMPREF9137_0138
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Entry
HMPREF9137_0138 CDS
T01459
Name
(GenBank) RHS repeat-associated core domain protein
Organism
pdn
Prevotella denticola
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
SpvB
FG-GAP_3
TcdB_toxin_midN
FG-GAP
Amidase_5
Motif
Other DBs
NCBI-ProteinID:
AEA20732
LinkDB
All DBs
Position
146671..155904
Genome browser
AA seq
3077 aa
AA seq
DB search
MKYSTHSLLLPFLLLAGTVLNSCNGGSRPAGQADVTTDTASSVRGDCTSRQAAPLRKQVK
DSIQGSSVKSSSKGVVRNDKENRVDTHKLDRKSARLFADLGRRTVSKFFTNSDSDTLNVG
RAQLGVPREAMEKGKVLSITPLRKGELPTLPTGMVNVTGSCDTLMARTDTVSGYRFLPHG
NHFVHHLASIAVPYDSTLIPKGYTVDDIHTYYYDELHQRWTMLQSKGIDTKREVAMAETS
HFTDVINGIIKVPESPETQNYVPTGISELKAADPAAGIQQIEAPSANQNGTATLSYPFEV
PAGRNDIGVSAGLQYSSEGGSSFAGYGWSLPVQSIDIETRWGVPRFDSRYESESYLLMGQ
QLSDRLYRRTDSLSRQTDKQFYPMTEGGFSRIIRKGNSPKNYYWEVTGKDGTVYSYGGHG
GHASDATSLADTKGNRIRWALDRVTDVHGNFAAFHYMKSGNNLYPERYTWTGFGETEGLY
SIEFNWNTGNVHRVDYVRSGRLGVLQTDSLLLGSVEVKNNGQQLRSYTIHYEKGPFGKTL
LKSIDQNDSKGIVVAAQSFNYYNDVKKGLYADSITTYTAGIDNYGKLVKTKIGHFDEHLS
LLGGASSKGNTIGGGIMVGAGWGPATASAGASYSHTNSSNEGRVTLVDINGDGMPDKVWK
GSDGKLHYRLNMNKALSHPVFGKEQALVGVNSFSSGKATSYTLSANVATGFGPANMGYAI
SKTKDQNKTKVYFQDFNSDGLVDIAVNGIVYFNHSDGKDVTFAPASTATGNPIPSIAGVN
VAPAFKVDYKTVRDSLEREFPLHDVVRVWRAPYSGTVSVMSHVEKHSPEGDGVSLSMQFN
SDVLWKDTLLQSGSVTLPAITRSVKPGDVFVFRVGARYSGIGDDVIWDPEITYTSIKTDK
YAGEDLKRYRSSEDYISGAYSTAALSETAVNRFEGTFNKQKTSDDIILAIIKTDKDGNQL
VMDSLLLKADTVISHGSFSGNLTATAGEEATVNFIIRTASPINWKHIDWRPVFYADTMKY
VLSPQCLMFSKNISLCPDTVIGRNVSIQGPVWGKALTLVPELSVQRTSNKDTAPATVYMT
IKDDHGSLLYRKELTLGSSNQLTGSTIRVADGSVLAQKMSAGKIQVTYSILNELENATAK
LKIFRDSVVSPATAGSPAVLRPVRVSTVNASVYSSFNRFDYGQLYKGWGSFAWNGTAKNV
AIPKDKMKIPETNEYYHDGKVNESAVEANEMDINRQLFFTLSYLPEKKYFVSATDSAYVG
SVVMRPSRLGEDDIIVDTVDYNIQGGGLAAPVLLTESKSKGKTYNMGFSLGASLGVNKSN
TSQQSYNIISAMDLNGDGYPDWLNDNDGKVVAQLTQPTGILGKGSLQYDVENAATDGDAS
NIGGDIGLSSDKSAYSFKDFKEKMAVAKAAFAQHTTTKQIMKQRAAEGNSASHSGKVAEF
SCGASGNFSSGTSETVRGWEDLNGDGLPDMVTDGTVRYGLGYDFTPATASSLTQLESTKN
SNFGDGLGITVPVLGLFSVNIGQNDTESLTSTRSQLSDVNGDGLPDLLQLDEKGNLKATL
NTGSGFMSGSTSLGQSNISDNLGSSVAVYASTAYTYTIPLPFGFTISITPSVQGSHSESI
SRTTAAVMDMDGDGLPDLVYSDSENHLYVRRNLTGRTNLLRSVTLPFGGHIHIGYEQTTP
SYDLPGRRWVMSSVETTGGYKENGAIRSRNTFEYSGGYRDRRERDFYGFKQVRTNQIDTE
NGDRLYRYSVQTYGKNRDYYAHGLVTSEYLYTADGKKLQGSLYDYDLKTLAAGSNTADAV
VFPALKTLVQSNFDAANGDSLAVTVSNTYDDYGNLQGYKETTTGYSLEADINYHKIADKY
IVSVPSHITVSSGGRTYRERSTKVDGNGEITEIMLHNGDKPSVYNMTYDGYGNITRMTKP
ENYNHQRMFYAYTYDDRYHSLVTSVKDAYGYSSSTAYDGLWNAPSVTTDLNGQKMEYTYD
ALGRQQTIRAPYEIESGQPFTIRFEYFPAERKAHTIHYSKEGNIDTYTFADSLMRAVQTK
QTGVVWSGGSNQKVSIVSGRAVIDAFGRNIAAYYPMTESYGNIGTYNHATGDLQAKTEYD
AHDRTMSVTLADGSVTRTAYSIGSHDGEPMLQTTVTDALGRHAESYTDAKGRNRETVQHA
RGEDITVKYSYDPVGQVMTVQHPNGRETKYAYDLLGRKLMVNHPDAGETDMTYDAAGNLL
TKLTAELRKSISDKGYISYTYDFERLHEVLYPENLFNRVTYTYGKAGDKYNRAGRLALVE
DASGGEAYYYGRQGEVTKTVRTVMASVADIRTYVYGATYDSWNRVQTMTYPDGEVVTYHY
NAAGQVERLTSNKQGRQSVIVDRIGYDKEGHTVYTKLGNGTETTYTYDKQRERLQMMNLT
ADGQTVMENRYRYDAVDNILGITNAADPTSLTKLNRAKLGGRSAHTYEYDELNRLVHASG
RAKRASYDMVMSFGRMSEPLTKVQKVDSTTTAKSYDFAYKYEDSNHPTAPTQIGHDHYTY
DANGNPVLVTNDSTNTTREMYWDEDNRLMVLSDNGKTSRYTYNAAGERIMKSYGTMEGVY
INGAPQGITFHETDNFTLYPASIISINKNRFTKHYFIGDKRVASRIGTGLFNNVYGRNGS
YVTAGQQDYAERMNQIQRQKEAYYKQQGIAPGVPTMKGAYGDPENTKRGYNSIIDTLGNH
DVPQGWIQTPHPNTTTGTNPGPPISWNDPSNPDDPQAGYGYIPNDTTREETFFYHSDHLG
STSYITDDHANITQYDAYLPYGELLVDEHSSSEDLPYKFNGKQFDNETGLYYYGARYMNP
VASIWYGVDVFQENKADVASYLYCFGNPINLTDPDGNWERDRHGNLIAQKGDNAVTYAKY
TGISNKESLKILLANGITINSKGVLSLKVGDVIKNNGFSRSQNILKNESTGNDIPNNSNQ
TLTYGKYKFNINAAVRTLNKNANSHSLGKCAKYVRLALEGGGFNTAGHPVDAKNYNHFLR
VRGWQVVSTSQGFQPLKGDIAVFRDFQGDKRYHSAGHIQMFNGNRWISDFRQNGFWAGGD
YRRHQPSFVILRFGRKE
NT seq
9234 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattctacacattcactcctccttccgttcctgctgctcgcaggaaccgtcctg
aactcctgtaatggcggcagccggccggcagggcaggctgatgtcactacggacacggct
tcttccgtgcggggagactgtacttcccgacaggctgcccccttgcggaaacaggtcaag
gacagcatccaaggctcatccgtgaagagtagctccaagggcgtagtacgaaacgacaag
gagaatcgtgtagacacgcacaagctggacaggaaatctgcaagactttttgcagactta
ggcagacgtaccgtcagcaagttctttaccaactccgacagcgacacgctcaatgtcggg
cgtgcccagcttggcgtaccacgtgaggctatggaaaagggtaaagttcttagtattaca
ccacttagaaaaggtgaactaccaaccttgcctacgggtatggtgaacgttacaggtagt
tgtgatacattgatggcaagaacagatacggtgtctggttatcgcttcttacctcatggc
aatcatttcgtccatcatctggcaagtatcgcagtaccttacgacagcacgttgataccg
aaaggctatactgtagatgatatccacacctattactatgatgaactgcaccaacgctgg
acaatgctccagtcaaaaggtattgataccaagcgtgaggtggcaatggcagagacttca
cactttacggatgtcatcaacggtatcatcaaggttccagagagtcccgaaacacagaac
tatgtccctacaggcatcagtgagctgaaggctgctgacccagcagcgggtattcagcag
attgaagccccatcagctaatcagaacggtacggcaacactgtcctatcctttcgaagtt
cctgcaggacgtaatgatattggtgtaagtgccggcttacagtacagcagcgagggcggc
agcagctttgcaggctatgggtggagccttcccgtgcagagcattgacatcgagacccgc
tggggtgtgccgcgcttcgacagccggtatgagagcgagagttacctgctcatgggacag
cagctcagcgaccggctctaccgcaggaccgactctttgtcacgtcagactgataagcag
ttctatccaatgactgaaggcgggttcagtaggattatccgaaagggtaacagcccgaag
aactattactgggaagtgactggcaaggacggtacagtctacagttacggcggacacggc
ggacatgccagtgacgccacgtctcttgccgacaccaagggcaaccgtatcagatgggcg
cttgaccgtgttaccgatgttcacggaaactttgccgctttccattacatgaaatctggc
aataacctttatccggaacgctatacatggacaggattcggggagacggaaggactgtat
agtattgaattcaactggaatactggtaacgtacacagagttgactatgttcgtagtggt
agacttggggttctccaaacagactctcttctgttgggaagcgtcgaggtcaaaaacaat
gggcagcagcttcgttcatatacaatccattatgaaaaaggacccttcgggaaaacactt
cttaagagcattgaccagaacgacagtaaaggtatagtagtagctgcacagagtttcaac
tactataatgatgtgaaaaagggactctatgcagatagtattacaacctatacagctggt
atagacaattatggcaagcttgtaaaaaccaaaattggacatttcgacgaacacttgtct
cttcttggcggagcttcctccaagggaaataccattggaggtggtataatggttggtgct
ggctgggggccggcaacagcgagtgcaggtgcttcttatagccataccaattcttccaat
gaaggccgtgtgacacttgtagatatcaatggcgatgggatgcccgataaggtatggaaa
ggtagcgatggtaaactccattatcgcctcaatatgaacaaggccctctctcatcctgtc
tttggtaaagaacaggctttggtgggtgtaaacagtttctcttccggcaaggctaccagc
tatactctcagtgctaacgttgctacaggttttggaccggcgaatatgggctatgccatc
agcaaaactaaggatcagaataagaccaaggtttatttccaggattttaatagtgatggc
cttgttgatattgcagttaacggaatcgtttatttcaaccatagcgacggaaaagatgtg
acctttgcacctgccagtacggccaccggcaacccaataccatcaatagccggagttaac
gttgcgcctgctttcaaagttgactacaagactgttcgcgactctttggagagagagttc
cctctacatgatgtcgtacgtgtttggcgagcgccttattcaggtacagtatctgttatg
agccatgtagagaagcactctcctgagggagatggtgtcagcctcagtatgcaattcaac
agtgacgtgttatggaaggataccctgttacaatcgggatctgtgaccttacctgcaata
acccgtagcgtaaaacctggagatgttttcgtatttcgtgtcggagcacgttactccggt
ataggtgatgatgtcatatgggatccggagataacttatacttctatcaagactgataaa
tatgccggtgaggacttgaagagatatcgcagcagtgaagattatataagcggtgcatat
tcaacagctgccctttcggaaactgcagtaaacagatttgaaggtacattcaataaacag
aagacttctgatgacattatactggcaatcataaagactgataaggatggcaatcagttg
gtcatggacagtctcctccttaaagcagatactgtgatcagccatggcagcttctccggt
aatctaacagccacagcaggagaagaggctactgttaatttcattatacgtactgcaagc
cccatcaactggaaacatatagactggagacctgtcttttatgcagacaccatgaaatat
gttctttccccgcaatgcctgatgttcagcaagaatatttctctatgtccagataccgtt
ataggcagaaatgtctctatacaaggtccggtatggggaaaagcacttactcttgtccct
gagctttctgtccaaaggacatcaaacaaggatacggcgccggcaacggtctatatgact
atcaaggatgatcatggatccttactctaccgcaaagaattaactctcggcagcagtaat
cagctgacaggatcaactatcagagttgcagacggttctgtacttgcacagaagatgtct
gcaggaaaaatacaggtgacatattctatcttgaacgaacttgaaaacgcgactgcaaag
ctaaagatatttagggattctgttgtcagccctgctacagcaggaagccctgcagtgtta
agacctgtcagggtttccacagtcaatgcgtctgtctattcaagctttaaccgttttgac
tatggacagctgtacaaaggttggggatcttttgcatggaatggtacggcaaagaatgtt
gcaataccgaaggacaagatgaagattcctgagacaaatgagtactatcatgatgggaaa
gtcaatgagagtgccgtagaagccaatgagatggatattaaccgtcaactgttctttaca
ctgtcttacttaccagagaaaaaatactttgtgagtgcaacagatagtgcctatgtcggt
tctgttgtcatgcgtccatcacgactgggagaggatgatatcattgtggatactgtcgat
tataatatacaaggtggaggactggcagcaccggtgttactgacagagtcgaaatcaaag
ggtaagacatataatatgggattctcattgggagccagcctcggagtcaacaagagtaat
acctcacagcagtcctataatattatctccgccatggacctcaatggtgacggttaccct
gactggttgaatgacaatgatgggaaagtcgttgcacaactgacacagcctacaggtata
ctgggcaaggggagcctgcaatatgatgttgaaaatgccgctacagatggtgacgccagc
aatataggtggagatattggcttatcttcagataagagtgcctattcctttaaagacttc
aaggagaagatggctgtcgcaaaggccgcctttgcacagcatacaaccacaaagcagatt
atgaagcagcgggctgcagaggggaattctgccagtcactctggtaaagtagcagaattt
tcttgtggagcaagtggaaacttctccagtggaacttcggaaacagtaagaggttgggag
gatcttaatggagatggacttcctgatatggttaccgacggcaccgttcgttatggactt
ggctatgactttacaccagcgacagcctcttctcttacacaacttgagtcgactaaaaac
agcaactttggtgacggacttggtatcacggttcccgtattgggactttttagtgtcaat
atcggtcagaatgatacggagagcttgacctctacgcgttctcagctcagtgatgtcaat
ggtgacggtctccctgatctccttcaactggatgaaaagggcaatctgaaggctactttg
aatactggaagcggatttatgtctggcagtacttctctcggacagagtaatatttctgac
aaccttggttcctctgttgctgtctatgccagcacagcctatacctatacgatccctctt
cccttcggtttcacaattagcattacaccaagtgtacagggatctcatagcgaaagcata
agccgtactacggctgcagttatggatatggatggagacgggcttcctgatcttgtctat
agtgacagcgaaaatcatctctatgtacgtcgtaaccttacgggcagaacgaacctgctg
cgctccgtgacgcttcctttcggcggacatatccatatcgggtatgagcagacaactcca
agttacgatttgccgggacgtcgctgggtgatgtcatcggttgagactacgggtggatac
aaggagaacggagcaatacgaagcaggaatacctttgaatacagcggtggctaccgtgat
cgtcgtgagcgtgacttctatggtttcaagcaggtgcgtaccaatcagatagataccgag
aacggtgacagactctatcgttactccgtacagacctatggtaagaacagggattactat
gctcatggactggttacgagtgagtatctctataccgctgatggaaagaagctgcaggga
tctctatatgactacgacctgaagacacttgccgcaggcagcaacacggccgacgctgtt
gtcttccccgccctgaagacgctcgttcagagtaactttgatgcagccaatggggacagc
ctggcggtcaccgtcagcaatacctacgatgactatggtaacctgcagggatataaggag
acgacaactggctatagcttagaggcagacatcaactatcataagatagccgacaagtat
atcgtcagtgtcccgagccatatcactgtcagcagtggcggcaggacttaccgtgaacgc
agcacgaaggtggacggcaacggtgagataacggagatcatgcttcataacggtgacaaa
ccttctgtctacaacatgacttacgacggctatggcaacatcacacgcatgacgaagccg
gagaactacaatcatcagcgcatgttctatgcttatacgtatgacgaccgctatcatagt
cttgtgacaagtgtcaaggatgcatacggttatagctccagcacggcttatgatggtctt
tggaatgctccgtctgtaacgactgaccttaacgggcagaagatggaatacacttacgat
gcactgggcagacagcagacaatccgtgctccgtatgagatagagagcggtcagccgttt
actatccgttttgagtacttccctgcagaacgtaaggcacataccatccattattctaag
gaaggtaacatagatacctatacctttgccgactcgctgatgcgtgccgtccagacaaag
cagacgggtgtagtgtggtctggtggaagcaatcaaaaagtctctatcgtcagtggaagg
gctgttatcgatgcttttggacgtaatattgcggcttattatccaatgacggagagctat
ggtaatattggtacttacaaccatgctacaggtgatttgcaggcaaagacagagtatgat
gcgcacgaccgtaccatgagtgttacgcttgctgatggcagtgtgacacgcacagcctac
agtatcggtagtcatgacggtgaaccaatgctccagacaacggtcacggatgcactggga
cgacatgcggagagctatacggatgccaaggggcgcaaccgtgagacggtgcagcatgct
cgtggtgaggatatcacggtgaagtacagctatgaccctgttggacaggtgatgacggtt
cagcatcctaacggcagggagacgaagtatgcctacgacctacttggtcgcaaactgatg
gtgaaccatcctgatgctggtgaaacggatatgacctatgatgcggcaggtaacctcctg
acgaaactcacggcagagcttaggaagtcgatatctgacaagggttacatctcttacacc
tacgacttcgagcgactccatgaggtactttatccagaaaatctctttaatcgtgttact
tatacctatggtaaagctggcgataagtataatcgcgctggtcgtcttgccctcgttgag
gatgcgagtggcggtgaagcctactactacggtcgtcagggtgaggtgacgaagaccgtc
cgtacagtcatggcgagtgtggcggatattaggacttatgtctatggtgctacgtatgat
agctggaaccgtgtgcagacgatgacttatcctgatggtgaagtggtgacctaccattat
aatgctgctggacaggttgagcgtcttacgagcaataaacagggacggcagagcgttatt
gttgataggataggttacgataaggagggtcatacggtctatacgaaactcggtaacggc
acggagacaacctatacctacgacaagcagcgtgaacgtctgcagatgatgaatcttaca
gcggacggtcagactgtgatggagaacaggtatcgttatgatgccgtggacaacatcctc
ggcatcacgaatgccgccgacccgacgtcgctgacgaagctcaacagggcgaagctggga
ggaaggagtgcgcatacgtatgagtacgatgagctgaaccgtcttgtccacgcaagcggc
agggccaagcgtgcatcgtatgacatggtgatgtcgttcggacggatgagtgaaccgctc
actaaggtgcagaaggtagactcaacgacaacagctaagtcttatgacttcgcttataag
tatgaggacagtaaccacccgacagctccaacgcagattggtcacgaccattacacctat
gatgccaacggtaatcctgtgctggtgacaaatgacagcaccaacaccacgagggagatg
tactgggatgaggacaaccgtctcatggttttaagcgataatggcaaaacctcacgctat
acgtataatgcagccggtgaacgtatcatgaagagctacggcacgatggagggtgtgtac
atcaacggtgctccgcagggcatcaccttccacgagacggacaacttcacgctttatcct
gcttcgataatcagcatcaacaagaaccgcttcacaaagcattactttattggtgacaaa
cgagttgcttcaaggataggaacgggtctgttcaataacgtctatggacgtaacggctct
tacgttactgctggtcagcaggattatgctgaacgtatgaaccaaatccaacgtcagaag
gaagcgtattacaagcagcagggcattgcacctggtgtacctacaatgaagggtgcgtat
ggcgatccggagaatacaaaacgaggatataactctatcattgatacactcggtaaccac
gatgtaccgcaaggctggattcagactccacatcctaacacgaccacaggcaccaacccc
ggtcctcctataagctggaatgacccgagtaaccctgatgatccgcaggctggttatggc
tacatccctaatgacactacacgtgaagaaaccttcttctatcacagtgaccacttgggt
tcaacatcttacataacagatgaccacgctaacattacccagtatgatgcttacctgcca
tacggagagttattagttgacgaacacagcagctctgaagacctgccgtataagttcaat
ggcaaacagttcgataacgaaactggcttgtattattacggtgcaaggtatatgaaccct
gtggcaagtatttggtatggggtggatgttttccaagagaataaagcagacgttgcttct
tatctatattgcttcggcaatcccattaatctaacagatccagatggaaactgggagcgt
gatagacatggtaatttgatagcccagaaaggtgataatgccgtgacttatgcgaagtat
acaggaatatcaaataaagaatctcttaaaattttgttagcaaatggtatcacaattaat
tctaaaggagtgctaagtctaaaagttggcgatgttattaaaaataatggtttttcaaga
tctcagaatattttgaagaatgaatcaacaggcaatgatattccaaataattctaatcaa
acattgacatatgggaaatataaatttaatataaatgcagctgtaagaacattaaataaa
aatgcaaattcccattctcttggtaagtgtgcaaaatatgtcagacttgccctggaaggt
ggaggttttaatactgccggacaccctgtagatgcaaagaattataatcactttcttaga
gtaagagggtggcaagttgtgagtaccagtcaaggctttcaacctctaaaaggtgatatt
gctgtctttagagattttcaaggggacaaaaggtatcattcagctggccatattcaaatg
tttaatggcaataggtggatctccgatttcagacaaaatggattttgggcaggaggcgat
tatagacgtcaccaaccctcatttgtgatattaaggttcggtagaaaagagtaa
DBGET
integrated database retrieval system
