KEGG   Pseudonocardia dioxanivorans: Psed_0328Help
Entry
Psed_0328         CDS       T01479                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pdx  Pseudonocardia dioxanivorans
Pathway
pdx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Psed_0328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pdx03400]
    Psed_0328
Enzymes [BR:pdx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Psed_0328
DNA repair and recombination proteins [BR:pdx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Psed_0328
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEA22601
UniProt: F4CQK3
LinkDB All DBs
Position
373507..374439
Genome map
AA seq 310 aa AA seqDB search
MQPMLATPGALPTGPGWVYEVKWDGMRLLADVRDGLVRLLTRGGRDVAGSFPELARLDAV
APDLLLDGEVVLLDRGVPSFTALTERIHGAVSPARAAARPVTFMVSDVLRLYGVDLTARP
LEERRGTLERLDLTRVPAVSLSPSYTDGSALLAATAQRGMEGIVAKRADSPYTPGRRTAW
IEVTHRLTRTCVVGGWRPERSNPTRIAALLVGVPGRDGLRFAGRVTAGLAGDAVQRILHG
ALDGLTTVAPPFDEPLPRVDGAGARWCEPLVVAEVAHAGTEGGRLLRPEFRGLRDDLDPA
DVDPFPAPAG
NT seq 933 nt NT seq  +upstreamnt  +downstreamnt
gtgcagcccatgctcgccacccccggcgcgctcccgaccggccccggatgggtctacgag
gtcaagtgggacggcatgcggctgctcgccgacgtccgcgacgggctcgtccggctgctc
acccggggcgggcgcgacgtggcgggcagcttccctgagctcgcccggctcgacgccgtc
gccccggacctgctgctcgacggcgaggtcgtcctgctcgaccgcggcgtccccagcttc
accgcgctcaccgagcgcatccacggcgccgtcagccctgcgcgggcggcagcccggccg
gtcaccttcatggtgtccgacgtgctgcgcctctacggcgtcgacctcaccgcgcggccg
ctggaggagcgccgtggcacgttggaacgcctggacctgacgcgcgtgcccgccgtctcg
ctctcgccgtcctacaccgacggcagcgcgctgctcgccgcgacggcgcagcgggggatg
gaggggatcgtcgcgaaacgggccgacagcccctacacaccgggacggcgtacggcctgg
atcgaggtgacccaccggctcacccggacgtgcgtcgtcggcggctggcgcccggaacgc
tcgaacccgacgcggatcgcggcgctgctggtcggcgtgcccgggcgcgacggcctgcga
ttcgcgggccgggtcaccgcggggctggcgggcgacgcggtgcagcgcatcctgcacggc
gctctcgacggcctgacgacggtcgcgcccccgttcgacgagccccttccccgtgtcgac
ggggcgggcgcgcggtggtgcgagccgctcgtcgtcgccgaggtcgcgcacgcggggacc
gagggcggtcggctgctccggccggagttccgggggctgcgcgacgatctcgaccccgcc
gacgtcgaccccttcccggcgcccgccggctga

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