Pectobacterium parmentieri SCC3193: W5S_0715
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Entry
W5S_0715 CDS
T02514
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W5S_0715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pec03019
]
W5S_0715
03016 Transfer RNA biogenesis [BR:
pec03016
]
W5S_0715
Enzymes [BR:
pec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
W5S_0715
Messenger RNA biogenesis [BR:
pec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
W5S_0715
Transfer RNA biogenesis [BR:
pec03016
]
Prokaryotic type
tRNA degradation factors
W5S_0715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
DUF4172
aRib
DUF2110
SLS1_KH2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AFI88837
UniProt:
A0A0H3I2M8
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All DBs
Position
782384..784504
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA
GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNV
SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQTQEAAAPSSEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaagtttcaatatggtcagcataccgtcacgctagagacc
ggtatgatggcacgccaggctaccgccgctgtaatggtaagcatggatgacactgcggta
ttcgttaccgttgtcggcgctaaaaatgctaaaccaggccaaagtttcttcccgttgacg
gttaactatcaggagcgtacctacgctgctggacgtttccccggtggttttttccgccgt
gaaggtcgcccaagcgaaggcgaaacgctgatttctcgtctgattgaccgtccgattcgc
cctctgttcccagaaggtttcctgaatgaagttcaggtgattgccactgtcgtttccgtt
aacccacaggttaaccctgacatcgttgccatgattggtgcttctgcggcgctgagcctg
tctggtatcccgttcagcggtcctatcggtgcagcacgcgtcggttacctgaacgaccag
tatgtcctgaacccaacgacagatgagctgaaagaaagccgtctggatctggttgttgca
ggtacacaaggcgcagttctgatggtggaatcagaagctgaagtgctgagtgaagatcag
atgctgggtgcagtcgtgtttggtcacgaccaacagcagatcgttatcgaaaacatcaac
tcactggttgcagaagcgggcaaaccgaagtgggaatggcatgcgccagaagttaatgtt
tctttagagcaacgtgtacaggctctgtctgaagcacgtttgggtgacgcttaccgtatc
accgaaaaacaagagcgttatgcacaagttaacgtcatcaaagctgacgttgttgctgcg
ctgcaagccgaagatgaaacgctgaatgctggtgagatccaggaaattctgggcaacatc
gagaaaaatgtcgtgcgtagccgtgtactggctggcgaaccgcgtatcgatggccgtgaa
aaagacatgattcgtggtcttgatgtgcgtactggtgtactgccacgtacccacggttct
gcgttgttcacccgtggtgaaacgcaggcgctggtaactgcaacgttgggtactgagcgt
gacgcgcagaccatcgacgaactgaccggtgaacgtaccgatcgcttcctgctacactac
aacttccctccgtactctgtcggtgaaaccgggatggttggctcgcctaagcgtcgtgaa
attggtcacggtcgtctggctaagcgcggtgtgttggctgttatgccgaaggcgaacgaa
ttcccgtacaccgtgcgtgtggtctctgaaattacggaatctaacggttcttcttccatg
gcgtctgtctgcggtgcttctctggcactgatggatgcaggtgtgccgatcaaatcagcc
gttgcgggtattgcgatgggtctggtgaaagaaggcgacaactttgttgttctgtccgac
attctgggtgatgaagatcatctgggcgatatggactttaaagttgctggtagccgtgaa
ggtattaccgcgctgcagatggatatcaagatcgaagggattacccgtgagatcatgcag
gttgctttgaatcaagccaagggtgcgcgtttgcacattctgggtgtgatggagcaggca
atcagcacgccgcgtggcgatatctctgaattcgcaccgcgtattcacaccatcaaaatc
agtaccgataagatcaaagatgtgattggtaaaggtggttctgtgatccgtgcgctgacg
gaagagactggcacgactattgaaattgaagacgatggtactgtgaagatcgcttcaact
gacggcgaaaaagcaaaacacgcaattcgtcgtattgaagagatcactgccgaaatcgaa
gttggccgcgtgtatcagggtaaagtgactcgcatcgttgactttggtgctttcgtcgct
attggcggtggcaaagaaggcctggtgcatatttctcagatcgctgacaagcgcgtagag
aaagtgactgactacctgcagatgggtcaggaagtgccggtcaaggttctggaagttgat
cgtcagggccgcgtgcgcttaagcatcaaagaagccaatgcacaaactcaggaagcggca
gctccgtcttctgaggaataa
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