Planctopirus ephydatiae: Spb1_14560
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Entry
Spb1_14560 CDS
T06220
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
peh
Planctopirus ephydatiae
Brite
KEGG Orthology (KO) [BR:
peh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
peh03016
]
Spb1_14560 (rnd)
Enzymes [BR:
peh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Spb1_14560 (rnd)
Transfer RNA biogenesis [BR:
peh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Spb1_14560 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QDV29548
UniProt:
A0A518GLV0
LinkDB
All DBs
Position
complement(1791294..1792565)
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AA seq
423 aa
AA seq
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MTESLMTQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV
RDLAPWWEIMLDPDIVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGFRGRSFPLGYDA
LVKRVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVE
DEFTRLVRDVVLERADEAWLKLPGLHKLNSRELAVAKNVFWWREHEAEARDKPARRILRD
DLLIELARRQPANIDELVATRDMNRTEYRKAAAEILAAIDTALTLPEDQLPSRPPEPEDD
QSHDEQLLGQLLGIALANRCAEMNVAMSIVGKTADLRHLVRWHVFGDKRHGTPRLMQGWR
AEVCGDLLSNVLDGKISLRVADPQSDHPLVFEYRSDEGIVEKTSRLGPAKRPVRPSRRKP
KSS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcgttgatgactcagcagcatgagtttgaagcattctgcaaatccatccgt
caagcggggattgtggggttcgatacggagtttatttcggagtttacctggcgtcccgaa
ttgtgcctgctgcagctggcgacacctgatcgagcagttctggtcgatccgtttgaagtg
cgtgatctggctccctggtgggagatcatgctggatcctgacatcgtggtggtggcgcat
ggtggtcgcgaagaagcgcggttctgtgtcaccaacacgggacaggctccggtcaacttt
aaagacgtgcagattgcggaaggatttcgaggtcggagttttccattgggttacgatgcg
ctggtgaagcgtgttctgggtcataaatcccacgggaaagagacacgttcggactggcgg
cgaagaccattgacgaagtcgcaggtgcattatgccctcgaagacgtgcagcacatcctg
cccatctgggcgaaacaatcggccgatttgaagaaaaaaaatcgactggcctgggttgaa
gatgaattcacccgactggttcgcgatgtggtactggaacgagcggacgaggcctggtta
aagctgcctgggctgcacaagttgaattcccgcgaactggctgtggccaagaatgttttc
tggtggcgggagcatgaagcggaggcgcgtgataagcctgcacgacgcatcttgcgggat
gacctgttgattgagctggctcgacgccagccagctaacattgatgaactggtcgcgacc
cgggatatgaatcggacagagtatcgcaaggcggccgcagagattctcgcagcgattgat
accgccctgacgctccctgaagatcagttgccttcgaggcccccggagccggaggacgat
cagtcgcatgatgagcaattgctgggtcagcttcttggaattgcgctggccaaccggtgt
gctgaaatgaatgtggccatgtcgattgtggggaagacggctgacctgaggcatctggtg
agatggcatgtctttggggacaagcggcatggaacaccccggctgatgcagggctggaga
gccgaagtatgcggcgacctgctcagtaatgtcctcgatggaaaaatctcgttgcgagtg
gccgacccgcaatcggatcatccgctggtgttcgagtatcgcagtgatgaagggattgtc
gagaaaacctcgcgactaggaccagcgaagcggcctgtgagaccatctcgccggaagcct
aaatcttcgtga
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