Pedobacter sp. KBS0701: FFJ24_018920
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Entry
FFJ24_018920 CDS
T06361
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pek
Pedobacter sp. KBS0701
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pek03016
]
FFJ24_018920
Enzymes [BR:
pek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FFJ24_018920
Transfer RNA biogenesis [BR:
pek03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FFJ24_018920
Prokaryotic type
tRNA splicing ligases
FFJ24_018920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF993
Motif
Other DBs
NCBI-ProteinID:
QDW26785
LinkDB
All DBs
Position
4697455..4698879
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AA seq
474 aa
AA seq
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MNNNITGNNLIEIGYTEGKIVGLALAIVKENFADIEEKELLALFKKVKDYPESFLDDEVL
NTLATALIEEANAPKDETIKLVNNVKPYAVFGPDYIEEGARNQMDIAMKLPVSVAGALMP
DAHQGYGLPIGGVLATRNAIIPYGVGVDIGCRMALSIFDIPEKHYFGKDAMYKRELIAFT
KFGAGQNFKGSEKADHEVLENEAFNSTPFLKNLHGKAWAQLGTSGGGNHFVEWGIIDFAK
RDEILNIDKGRYVALLTHSGSRGFGATIAGHYTKLAKDICKLPKEAVNLAYLDLNSSEGQ
EYWIAMNLAGDYASACHEVIHKRLTKAIGAKVLAKVENHHNFAWKEMFNGQEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGEMNAINSASHGAGRQMSRTKAIQSITKSDMKAIL
KDHNVTLIGAGLDEAPMAYKDINKVMAAQTELVDIVAKFEPKMVRMADDGSRED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacataacaggtaataacctgatcgaaataggttataccgaaggaaaaata
gtaggcctggctttagctatcgtgaaagaaaattttgcggatattgaagaaaaagaatta
ttggccttatttaaaaaagtaaaagattatccggaaagttttttggatgacgaagtatta
aacactttggccacagcactgattgaagaagctaatgcaccaaaagatgaaactatcaaa
ctagtaaacaatgtgaaaccctacgcggtatttggccctgattacattgaagaaggcgcc
agaaatcaaatggatatcgccatgaaattaccggtttcggtggctggcgcactaatgccc
gatgcccaccagggttatggtttgccgattggcggtgttttggcgaccagaaatgcaatt
atcccgtatggcgtaggtgtagatatcggttgcagaatggctttgagtattttcgatatc
cccgaaaaacattatttcgggaaagatgcgatgtacaaacgcgaattgattgcttttacg
aaatttggtgcaggtcaaaattttaaaggcagtgaaaaagcagatcatgaggttttagag
aatgaggctttcaacagcactcctttcctgaaaaatctgcatggaaaagcctgggctcaa
ttgggaacctctggtgggggtaaccactttgtggaatgggggattattgattttgccaaa
cgtgatgaaattttaaatattgataaaggacgttatgtggctttattaacccactctggt
tcaagaggttttggcgctaccattgcaggtcattataccaaacttgctaaagacatctgt
aaattgcctaaagaggctgtaaatcttgcttaccttgatttaaactcttctgaagggcaa
gaatactggattgccatgaacttagctggtgattatgcttctgcttgtcatgaggtgatc
cataaaaggttgactaaagccattggtgccaaagttttggccaaagtagaaaaccatcat
aattttgcctggaaagaaatgtttaatggccaagaagtgattgttcaccgaaaaggagca
acaccggctggcaaaggcgtaatggggattatccccggtagtatgacggccccgggattt
ctggttaggggaaaaggcgaaatgaatgcaattaattcagcatcacatggcgcaggtaga
caaatgagccgaacaaaagcgattcaatcgattacgaaatcggatatgaaagctatttta
aaggatcacaatgttactttaattggagccggcttagatgaggcgccaatggcttataaa
gacattaacaaggtaatggcagcacaaactgaactggttgatatagtggctaaatttgag
cctaaaatggtgagaatggctgatgatggaagcagggaggattag
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