Candidatus Pelagibacter sp. IMCC9063: SAR11G3_00337
Help
Entry
SAR11G3_00337 CDS
T01465
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAR11G3_00337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pel03019
]
SAR11G3_00337
03016 Transfer RNA biogenesis [BR:
pel03016
]
SAR11G3_00337
Enzymes [BR:
pel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SAR11G3_00337
Messenger RNA biogenesis [BR:
pel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAR11G3_00337
Transfer RNA biogenesis [BR:
pel03016
]
Prokaryotic type
tRNA degradation factors
SAR11G3_00337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
KH_2
DUF6438
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AEA80812
UniProt:
F2I045
LinkDB
All DBs
Position
complement(305736..307823)
Genome browser
AA seq
695 aa
AA seq
DB search
MFNITKKEITWGDKKLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLT
VNYQEKYYAAGKIPGGYFKREARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISY
DKENDPEALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQLELIVA
GTEDAVLMVESEASGLSEKQMLDAVKFGHDKAKEVINLIKDFAKEAGKERWKIEEKDYSE
LKEKISSAVADDLQKAFDESDKQIRTGLIAAAKDKVTAMFEGDETYSKVEIGDQFKSVEK
KIVRTQILKDSKRIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDDE
QRLETLDGAERSRFMLHYNFPPYSVGEVGRIGTGRREIGHGKLAWRAINSSLPSKEEFPY
TFRIVSEITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGDDYSILSDILG
DEDHLGDMDFKVAGTKDGITSLQMDIKITGITFDIMEKALDQAKEGRIHILGEMAKALTE
SRKELSKNTPKMERIQVDKKDIAAVIGKGGATIREIVELSGAKLDINDDGMVTIAAADEE
SRMKAVQMVKDIVAKPEMGKIYKGKVVKIMEFGAFVNFLGKQDGLVHISQLAAKRVENVS
DVVKEGDEVSVKVVGFDRGKVKLSMKEVTEDTKSD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacatcacaaaaaaagaaattacttggggcgataaaaaattaacactagaaaca
ggtagagtagctcgtcaagcagacggagcggttatgcttacttgtggagagacggttatc
ttggcaactgcagttgcagcaaaacaagcaaagccagatatggattttttccccttaaca
gttaattaccaagaaaaatattatgcagctggaaaaattccaggtggttactttaaaaga
gaagctagacctacagaagctgaaacattaatatcaagattaattgacagaccaattaga
cctttatttccgagttcgttcagaaatgaaactcaggtgctgcctacagtaatatcatat
gacaaagaaaacgatccagaagcattagcattaattgcaagctctgcagctttagctatt
tcaggaattccttttatgggacctgtagctgctgcaaaagtaggaatgatcgatggagag
tttgttttaaacccaaccaaagagcaaattaaagattcgcagttagaattaattgttgct
ggtacggaagatgctgtattgatggttgaatcagaagcttcaggcctatcagaaaaacaa
atgttagatgcggttaaatttggtcatgacaaagctaaagaagtcattaatttaattaaa
gattttgcaaaagaggcaggtaaagaaagatggaaaatagaagaaaaagattattcggag
ctaaaagaaaaaatttcttcagccgttgctgacgatttacaaaaagcatttgatgaatct
gacaaacaaattagaactggtttaattgctgctgctaaagataaagtaacagctatgttt
gaaggcgatgagacttattctaaagttgaaatcggagaccaattcaaaagtgttgagaaa
aaaattgtacgaacacaaattttaaaagattcaaaaagaattgatagaagaaaactaaac
gaagttcgagatattaaatgtgaagtgggtgttttacccaaagtgcatggttcttcattg
tttacaagaggagaaacacaagctttagttgtggctactctaggaacttcagatgatgag
caaagattagaaactttagatggagctgagcgatcaagatttatgcttcattataacttc
ccaccttattctgttggagaagttggacgtattggaactggaagaagagaaattggtcat
ggtaaattagcatggagagcaattaattcttcacttccttctaaagaagaatttccttac
acatttagaattgtgtctgagattacagaatcaaatggttcgtcttctatggcaactgta
tgtggagcatcgcttgcacttatggatgcgggtgtaccgattaaaacaccaattgctggt
attgcaatgggacttattaaagagggtgatgactattcaatccttagtgatattttggga
gatgaagatcatcttggagatatggactttaaagtagcgggaactaaagatggaattact
tctcttcaaatggatatcaagattacaggaatcacatttgacattatggagaaagcttta
gatcaagctaaagaaggaagaattcatattttaggtgaaatggcaaaagctttaacagag
tctagaaaagagctttctaaaaacacccctaagatggaaagaattcaagtagataaaaaa
gatatcgcagcagtgattggaaaaggtggagctacgattagagaaattgtagaactttca
ggtgccaaactagatatcaacgatgatggtatggttactattgcagctgctgacgaagaa
tctagaatgaaggcagtgcaaatggttaaagatattgttgccaaaccagaaatggggaaa
atctataaaggtaaagtagtaaaaattatggaatttggtgcatttgtaaatttcttagga
aagcaagatgggctagttcatatatctcagcttgcagccaagagagtagaaaatgtttct
gatgtcgttaaagaaggtgatgaagtttctgtgaaagtagtagggtttgaccgaggaaaa
gttaaactttctatgaaagaagtaacagaagatacaaagtcagattag
DBGET
integrated database retrieval system
