KEGG   Pedobacter sp. PACM 27299: AQ505_07640Help
Entry
AQ505_07640       CDS       T04140                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pep  Pedobacter sp. PACM 27299
Pathway
pep03030  DNA replication
pep03410  Base excision repair
pep03420  Nucleotide excision repair
pep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AQ505_07640
   03410 Base excision repair
    AQ505_07640
   03420 Nucleotide excision repair
    AQ505_07640
   03430 Mismatch repair
    AQ505_07640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pep03032]
    AQ505_07640
   03400 DNA repair and recombination proteins [BR:pep03400]
    AQ505_07640
Enzymes [BR:pep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AQ505_07640
    6.5.1.6  DNA ligase (ATP or NAD+)
     AQ505_07640
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AQ505_07640
DNA replication proteins [BR:pep03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AQ505_07640
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AQ505_07640
DNA repair and recombination proteins [BR:pep03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AQ505_07640
   NER (nucleotide excision repair)
    Other NER factors
     AQ505_07640
   MMR (mismatch exicision repair)
    Other MMR factors
     AQ505_07640
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ALL05372
UniProt: A0A0P0NF94
LinkDB All DBs
Position
complement(1804501..1806096)
Genome map
AA seq 531 aa AA seqDB search
MKRFTELIAQLESSNKTNDKMAALVSYFNEAEEQDKPYVIAMFTGKKPKRPVSTALLKEW
AIEKSGIPAWLFAESYHNVGDLSETIALILPPPSQASDLKLSEWIKALAALNGKDDAAKK
SFITDSWDRLNTPERFIFNKLISGNFRIGVSGKMLVNALAKQSNIPANQIMHSIMGKWKP
EEITYPELIAGAHVNTDHSWPYPFCLAYALEQAPEALGAIQEWQAEWKWDGIRGQIVKRG
GELFIWSRGEELVTDQFPELHFLAAELPDGTVLDGEILAVKSGKVLPFAILQQRLNRKTI
AKNQLENAPIGFYCYDLLEYQGADQRGEPLKNRRKKLELLISKIPAQENLLLSPVVEAKS
WAELAEIRMDSRAMNSEGLMLKKLDSLYHSGRKRGDWWKWKINPYTVDAVMIYAQKGSGR
RAGFFTDYTFAVRDGEQLITIAKAYSGLTDAEIKQVDAFVKKNSIEKFGPVRTVKPELVF
EIAFEGIAESKRHKAGLALRFPRIARWRKDKKAEEINTLADLRQLLNSTLA
NT seq 1596 nt NT seq  +upstreamnt  +downstreamnt
ttgaaacgcttcacagaattgatcgcccagctggaaagcagcaataaaaccaatgataag
atggccgcattggtgtcctattttaatgaggcagaagagcaggacaagccttacgtgatc
gccatgtttacgggcaaaaaaccaaagcgtccggtcagcaccgcactgcttaaggaatgg
gccattgaaaagagtgggattcccgcctggctttttgccgaaagctaccataacgtagga
gacctgagcgaaacaattgccctgattttacctcctccatcgcaagccagtgatctgaag
ctgagcgagtggatcaaggctttggcagccctcaatggaaaggatgatgcggctaaaaaa
agtttcatcactgattcctgggaccgtctgaacactcctgaacgctttattttcaataaa
ctgatttcaggaaacttcaggattggggtctctggaaaaatgctggtcaacgctttagcc
aaacaaagtaatattcctgccaatcagatcatgcacagcatcatgggcaaatggaagccg
gaagaaattacttaccctgagttgattgcgggtgcgcatgtgaatacagaccattcctgg
ccttatccattttgcctggcctacgcgctggagcaagcaccggaagctttgggagcaata
caagaatggcaggcagaatggaaatgggatggcatccgcggacaaattgtaaagcgtggc
ggagaacttttcatctggtcaagaggagaagaactggtcacagatcaatttccggagctt
catttcttagctgcggaattaccggatggaactgttctggatggagagattcttgcagtc
aaatcgggtaaagtattgccatttgccatattgcagcagcgattaaaccggaaaaccatt
gctaaaaaccaattggaaaacgcacctataggtttttactgttacgacctgctcgaatac
cagggagcagatcagcgtggggagcccctaaaaaacagaaggaaaaaactggaactactc
atttctaaaattccagcacaggaaaacctcttactttctccagtggtggaagcgaaatcc
tgggctgaacttgcggaaataagaatggactccagggcgatgaacagtgagggattgatg
ctcaaaaaactagattctctataccatagcggccgaaaaagaggcgattggtggaaatgg
aaaatcaacccttataccgttgatgcggtcatgatttatgcacaaaaaggaagcggcaga
agagccggctttttcacagattatacttttgctgttcgcgatggcgaacagctgattacc
attgccaaggcttattccggattaacagatgcagaaatcaaacaggttgatgcttttgta
aagaaaaattccatagagaaatttggccccgtacgtaccgttaaaccagaattggtattt
gaaattgcttttgaaggtattgccgaaagtaaaagacacaaagccggtctcgccctgcgc
ttccccaggatcgccaggtggagaaaggataaaaaagcggaagagatcaatactttagcc
gatttaaggcaattgttaaattctacattagcatag

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