KEGG   Pedobacter sp. PACM 27299: AQ505_12975Help
Entry
AQ505_12975       CDS       T04140                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pep  Pedobacter sp. PACM 27299
Pathway
pep03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AQ505_12975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pep03400]
    AQ505_12975
Enzymes [BR:pep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AQ505_12975
DNA repair and recombination proteins [BR:pep03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AQ505_12975
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ALL06331
UniProt: A0A0P0NH57
LinkDB All DBs
Position
complement(3076695..3077663)
Genome map
AA seq 322 aa AA seqDB search
MLKRKNNKVEMPEHISPMLCTLVQAPPIDSNYLFELKWDGYRVISKVDNGKVRMNSRSGL
DYTKRYPPIEKALKLLEHDIIIDGEVVIFTSEGKPDFDAIQLYNGHKSPIQYCVFDLLWL
DGHDLLDMPLIKRKDLLKSLIAKNPVLKFSESYDDGKELYQKTLNLDLEGIIAKEKDSSY
MPGGRGSAWLKIPTRKRQEFVIGGWADSDKTRSFKSLLFGAYEDGKFTWIGRSGGGYKLK
DMPGILEKLKAIETDKSPFVNEVLDTKGALTHWVKPQLVANFEFATWTKSGRIRKPATFL
GFRYDKKPKDVVREIPKDTNGK
NT seq 969 nt NT seq  +upstreamnt  +downstreamnt
atgctaaaaagaaaaaacaataaggttgaaatgccggagcatatttctccaatgctgtgt
acgctagttcaagcccctccaattgattctaattacctatttgagttaaaatgggatggt
taccgagttatttctaaagttgataatggcaaagtgagaatgaactcgcgaagtgggtta
gattacacaaaaagatacccacctattgaaaaggctctaaaattattagaacatgacatt
attatcgacggtgaagtagttatatttactagtgaaggtaaacccgattttgatgcaata
caattatacaatgggcacaaatcccctatccaatattgtgtctttgacttattatggtta
gatgggcatgatttattagatatgcctttgataaagagaaaagatttattgaaatccctt
atagctaaaaatcctgtgctaaaatttagtgaaagctatgatgacggtaaagaactgtat
caaaagacgctcaatttggatttagaagggattatagccaaagaaaaggatagctcttat
atgcctggcggtagaggatcagcatggttaaaaattccaacccgcaaaagacaagaattt
gtgataggtggttgggcagattcagataagacccgatccttcaaatcgttactttttgga
gcttatgaagatggaaaattcacatggatcggcaggtcaggtgggggttacaaactaaaa
gatatgcctggcattttggaaaaattaaaggctatagaaacagacaaatctccttttgta
aatgaggtactcgatacaaaaggtgcccttacccattgggttaaaccgcagcttgtagca
aatttcgaatttgccacctggacaaaatcaggacgaatacggaaaccagcaaccttttta
ggttttagatacgacaagaaaccaaaagatgttgtcagagagatacctaaagatacaaat
ggtaaataa

DBGET integrated database retrieval system