Petrimonas sp. IBARAKI: PEIBARAKI_6724
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Entry
PEIBARAKI_6724 CDS
T05132
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03030
DNA replication
pet03410
Base excision repair
pet03420
Nucleotide excision repair
pet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEIBARAKI_6724
03410 Base excision repair
PEIBARAKI_6724
03420 Nucleotide excision repair
PEIBARAKI_6724
03430 Mismatch repair
PEIBARAKI_6724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pet03032
]
PEIBARAKI_6724
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_6724
Enzymes [BR:
pet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PEIBARAKI_6724
DNA replication proteins [BR:
pet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PEIBARAKI_6724
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PEIBARAKI_6724
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEIBARAKI_6724
MMR (mismatch excision repair)
DNA ligase
PEIBARAKI_6724
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PEIBARAKI_6724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Auto_anti-p27
PTCB-BRCT
zf-NADH-PPase
BRCT_2
DUF918
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
BBD46731
UniProt:
A0A3G9DS52
LinkDB
All DBs
Position
complement(3346988..3349108)
Genome browser
AA seq
706 aa
AA seq
DB search
MDENISLESRIKIKDILMKDLFSNNNIQPAESPSVGGNSAAKDKLETLRKQLHEHNYNYY
VLSQPAISDIDFDALMQQLAELEKEYPEFYDPNSPTMRVGSDINKNFVQVQHRYPMLSLQ
NTYTEEEIADFFNRVKRSLNEDFEIVCELKFDGTSISLVYENGRLSQAITRGDGKQGDDV
TANVRTVRNIPLVLKGDNIPGYVEVRGEILMPWSVFEELNREREVQEEPLFANPRNAASG
TLKMQDSKVVAARKLESSVYYLMGEGLPSDSHFENMELARKWGLNVSATMKKCCSLEEVF
EFLKYWDVARKSLSVATDGVVLKVDSLSQQRNLGSTSKFPRWAIAYKFNAEKALTRLESV
TYQVGRTGAVTPVANLEPVLLSGTTVKRASLYNEDAILALDLHIGDRVYVEKGGEIIPKI
TGVDKEARFLIGDKVRFVTRCPDCGTPLVRNEDEAVHYCPNNENCPPQIKGRIEHFVTRK
AMNITMGPETIGLLYDKGLIRDAADLYALQFEDLVSLERWAETSANNLLASIEKSKAVPY
ERVLFALGIRFVGETVAQKLALAFHDIDLLAAATVEQLTLVEEIGDRIARSVKDFFENPG
CADFVNRLRAHGLQFQLSEEALAARTDKLAGLTVVISGTFELHSRDEYKAMILQHGGKNS
GSVSKNTDYILAGENMGPAKLEKAEKLGVKIIDEKTFLKMLDCSLL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttggatgagaatatttcattagaatcaagaatcaagataaaagatattttaatgaaggat
ttgttttcaaataacaacatacaacctgcagaatctccatcggttggcggaaattcggcg
gctaaagataagttggaaaccctccgcaaacagttacacgagcataattacaattactac
gtactgtcgcaacctgccatttccgatattgattttgatgcattgatgcagcaactggcg
gaattggaaaaggagtatcctgagttttacgatcccaattcgcccacgatgcgggtggga
agcgatattaacaagaactttgttcaggtgcagcatcgatatccgatgttgtcgctgcaa
aacacttacaccgaagaggagattgccgattttttcaatcgtgtaaagcgctcactgaac
gaggattttgaaattgtatgtgagttgaaattcgacgggacatcgatttcactcgtttac
gaaaatggcaggttatcacaggctattacccggggcgacggcaagcaaggcgatgatgtt
acggctaatgtccgtaccgtgcgaaacatcccgttggtgctcaaaggtgacaatatcccc
gggtatgttgaagtgcggggcgaaatcttgatgccttggagtgtttttgaggaactgaac
agggagcgcgaggtgcaggaggaaccgctttttgccaatccccgcaatgcggcatcggga
acacttaaaatgcaggactcaaaggtggttgcagccaggaaactggagtcgtctgtgtat
tacctgatgggagaaggattgccgtcagacagtcatttcgaaaatatggaacttgcccgc
aaatgggggctgaatgtatccgctacaatgaaaaagtgttgttcgttggaagaggttttc
gagtttttgaaatactgggacgtggcgcgtaaaagcctttctgttgctaccgatggcgtg
gtgctgaaagtagattccctttcgcagcaacgcaatctcggctcaacctccaagttcccc
cggtgggccattgcttacaaattcaatgccgagaaggcccttacccgtctggagtccgtt
acttaccaggtgggacgcaccggtgcagtaacacccgtagccaaccttgaacctgttttg
ctttcgggaacaaccgtaaaacgggcttccttgtacaacgaagatgccattcttgcactt
gatctgcacatcggcgacagggtttacgtggaaaaaggcggtgaaatcatacccaagatc
acaggagtggataaagaggcccgtttccttatcggggacaaggtgcggtttgtcacccgt
tgtcccgattgtggcactccgttggtacggaacgaggatgaagccgtgcactactgcccc
aacaacgagaattgtccaccacagataaaaggacgtatcgagcattttgttacccgcaag
gccatgaacatcactatgggcccggaaaccatagggctgctttacgataaaggcctgatc
agggatgctgccgatttatacgcgttgcaattcgaggacctggtgagcctggagcgttgg
gcggaaaccagtgccaataacctgctggcaagcattgaaaagtcgaaggcagtcccttac
gaaagggtattattcgctctcggaatccgttttgtaggagagaccgtggcgcagaagctg
gcattggcctttcacgatattgatttgttggcagctgctacggtggagcaactgacgttg
gtggaggaaatcggcgaccgcatcgctcggagtgtaaaagactttttcgaaaatcccgga
tgcgcggattttgtgaacagacttcgtgcgcatggcttgcaatttcaactgagtgaagaa
gccctggcggcaagaacggataagctggcgggactcaccgtggtgataagcggaacattt
gagttgcattcgcgcgatgagtataaagccatgattttgcaacacggcggaaagaacagc
gggtcggtatccaaaaacaccgattatatccttgccggagaaaatatggggcctgccaaa
ttagaaaaagccgaaaagctgggggtgaaaatcatcgatgaaaaaacatttttgaaaatg
ttggattgttcacttttatga
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