Populus euphratica (Euphrates poplar): 105124082
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Entry
105124082 CDS
T05872
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03020
RNA polymerase
peu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105124082
09124 Replication and repair
03420 Nucleotide excision repair
105124082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105124082
03400 DNA repair and recombination proteins [BR:
peu03400
]
105124082
Enzymes [BR:
peu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105124082
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105124082
DNA repair and recombination proteins [BR:
peu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105124082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
105124082
NCBI-ProteinID:
XP_011022252
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKVQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMPDHVEDLRNIRELRDVFDAEVQKLEADRYQ
LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV
VPGEDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE
EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR
IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSKFDESEGF
KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG
TPYHDGMMSPMLMSPNLRMSPTVDGVAFSPYVGGMAFSPSTSPASTSIGYSPSSPVYSPG
YSPTSPSYSPASPSYSPASPNYSPTSPTYSPSSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYNPQSAKYSPSLAYSPSSP
RLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQYSPS
AGYSPSAPGYSPSSTSQYTPQTSTKGDRDKKDGKGTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgattcccttactcgccagcggaggttgctaaagtccgcatggttcagttt
ggcattctcagccccgacgagataaggcaaatgtccgtgatacaaattgagcacagtgag
acaacagaaagaggaaaaccaaagccaggaggattaagtgatccgcggctgggtactatt
gatagaaagatgaagtgtgagacttgcacggcaaatatggcggagtgtccagggcatttt
gggcacttggagcttgccaaacccatgtttcatattgggtttatgaagactgtgcttagt
atcatgagatgcgtttgcttcaattgttcgaagatattggctgatgaagaggatcacaag
tttaagcaagccttgaaaataaagaatcccaaaagcaggcttaaaaagattttggatgct
tgcaagaataaaactaaatgtgaaggtggggatgaaattgatgttcaaggtcaagataat
gaagagccagttaaaaagagccgtggtggctgtggtgctcagcagccaaaacttaccatt
gaaggtatgaagatgattgcagagtacaaggttcaaaggaagaaaaatgatgatcaggaa
cagctgccagaacctgtggagagaaagcagacccttacagcagaaagggtcttaagtgtt
ttgaagaggataagtgatgaggattgtcagttgctgggcttggaccctaagtatgcacgt
cctgattggatgattctccaagtccttccaattccgccacctccagtgaggccctctgtg
atgatggatacatcctccaggagtgaggatgatttgactcatcagttagcaatgataatt
cgacacaatgagaatctgagaagacaggagaggagtggggcacctgctcatatcatatcc
gagtttgcacagttgttgcagttccatgtagctacatattttgacaatgagttgcctgga
cagcctcgggccacacagagatcagggagaccaattaaatctatatgtagcaggcttaag
gcaaaggaaggccggattaggggtaatttgatggggaaacgtgtggacttctctgcacgt
acagttattacaccagatcccaccattaacattgatgaattaggagtaccatggagtatt
gctctgaatctcacatatccagaaactgtgaccccttataacattgaaaggttaaaggag
cttgttgagtatgggccacatcctccacctggtaagaccggtgctaaatacatcataagg
gatgatggacaaagactcgatcttcgctacttgaagaaaagtagtgatcatcatctggag
ctcggttacaaggtggagcgtcatttaaatgatggtgactttgtcctctttaatcgtcaa
cccagtctccataaaatgtcaataatggggcacagaatcaagattatgccatattctact
ttccgcctgaacctgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgtcccacaatcatttgaaactagagcggaagtattggagctaatgatggtg
cctaagtgcattgtgtcacctcaatcaaaccgacctgtaatgggaattgtacaggataca
cttttaggatgccgcaaaatcaccaagagggataccttcatagagaaggatgttttcatg
aacatcttgatgtggtgggaggatttcgatgggaaagttcctgctccaacaattgtgaag
ccacgacctctttggactgggaaacaggtttttaaccttatcatacccaagcagatcaat
ttgattagaactgctgcctggcacatggattcagagagaggaatgatcactccaggtgat
acattagtccgcatagaaaaaggggagctgctttctggaactctctgcaaaaaaacgctt
gggacttcttctggaagtcttatacatgtcatttgggaagaggttggcccagatgcagct
cgtaaatttttggggcatacacagtggctagtgaattattggcttttgcaaaatgctttc
agtattggaattggagataccattgctgatgcatcaacaatggaaaaaattaatgaaact
atttcaaatgcaaaaaatgaggtgaaagatcttattaggaaagcacagaataaggagttg
gaggctgaacctggacggactatgatggaatcatttgaaaacagagtgaaccaggtgttg
aataaagctcgtgatgatgcaggaagcagcgcccaaaaaagtttatctgagagtaacaat
ctcaaggcaatggtcactgctggatcgaaggggagtttcattaacatatcacagatgact
gcttgtgtggggcagcaaaatgttgagggtaagcgtataccatatggtttcattgaccgg
acgttgcctcacttcaccaaggatgattatggtccagaaagtcgtgggtttgtggagaac
tcatacttgcgtgggttaaccccacaagagttcttctttcatgccatgggtggtagggaa
ggtctcattgatactgcagtgaagacttctgaaactggctacatccagaggcgacttgtg
aaggccatggaggatattatggtcaaatatgatggtacagtaaggaactcactgggggat
gtcattcagtttctatatggggaagatggtatggattctgtctggatagaatcgcaaaaa
ttggattctctcaaaatgaagaaagcagaatttgacagggtatttagatatgaatttgat
gatgaagactggaatcctacttacatgatgcctgatcacgttgaggatttgagaaatatc
cgagaattgcgtgatgtgtttgatgctgaagttcaaaaacttgaagcagatagataccaa
cttggaacagaaattgccaccacaggtgataatacatggccaatgcctgttaacctcaag
aggcttatctggaatgcacagaagactttcaagattgatacaagaattggaagggtttca
gatattcacccaatggaggctgtggaagctgttgataagcttcaggagagacttaaggtt
gttcctggtgaggatctgttgagtgtggaagcccaaaaaaatgccactctcttctttgga
atcttgcttcgcagcactttggccagtaaaagggtgttgcaggaatataggctcagtcga
gaagcatttgattgggttattggtgagatagaatcacgatttttacagtcattagttgca
ccaggtgagatgattggttgtgttgctgcacaatccattggtgagccagctactcaaatg
accctcaatactttccactatgctggtgttagtgcaaagaatgtcactctaggtgttcct
aggttgagggaaattattaatgtagctaaaaaaataaaaacaccttcactttctgtgtac
ctgaagcctgaatttaacaagacaaaggagaaggctaaaaatgttcagtgtgctttggaa
tacaccactctccgaagtgtcacacaagcaacagaagtgtggtatgatccagatcccatg
agtactataattgaagaggatgctgacttcgtgaagtcatactatgaaatgccagatgaa
gaggttgcaccggagaaaatatctccctggttgcttcgcatagagttgaaccgtgaaatg
atgatcgataagaagctaaacatggctgacattgctgagaagatcaatcatgagtttgat
gatgatttgacttgtatatttaatgatgacaatgctgagaaactgattcttcgtatccgt
atcatgaacgatgaagctccaaagggggagttgaatgatgaatcagctgaagatgatgtt
ttcttgaaaaagattgagagtaacatgctgactgaaatggctcttcgtggtatcccagat
atcaacaaggtgttcattaaaaatgctaaggtaagcaagtttgacgagagtgaaggattt
aagactacagaggagtggatgctggatacagagggtgtcaatctcctggctgttatgtgc
aatgaaaatgttgatgcccgaaagacaacaagcaatcacttaattgaagttatagaagtg
cttggaattgaggctgttcgtcggtccctactggatgaattgagagttgtcatttcgttt
gatggatcttatgtgaattaccggcatctggctatactgtgtgatacgatgacctaccgt
ggtcacttgatggcaatcactcgtcatggtattaataggaatgatactgggccaatgatg
agatgctcatttgaagagactgttgacattctccttgatgctgcagtatatgctgaaaca
gattacttgaggggtgtcactgaaaatataatgctgggtcagcttgcaccaattggcact
ggatattgtgctctttatctaaacgatgagatgttgaagaatgctattgagcttcagctc
cctagttatatggagggccttgattttggcatgacacctgctcgttctccagtttctggg
actccttatcatgatgggatgatgtctcccatgctgatgagtccaaatctccgcatgtca
cctactgtagatggagtggccttttcgccttatgttggtggaatggccttttctcctagt
acatctcctgcttcaacatctattggctacagcccgtcatctccagtctacagtcctgga
tacagtcctacttcaccttcatacagccccgcctcaccaagttatagccccgcttccccg
aattatagcccaacttcacccacttatagtcccagttctcctagttatagcccaactagt
cctgcctattctcctacaagcccatcatactcacccacttcaccaagctacagccccact
tcccccagctacagccccacatcccccagctacagccctacttccccgagctacagcccg
acatccccaagctacagccccacatcccccagctacagcccaacttcacctgcttacagt
cccacttcacctgcatacagtccaacatcacctgcatacagccccacctccccatcatac
agccccacatccccatcctacagccctacatccccatcatatagccccacatccccatcc
tacagcccaacttcaccagcctatagcccaacatcccctggctacagcccaacctcgcca
agttacaacccccaatcagcaaaatacagcccatcactggcatactcacctagcagtcca
agactgtcaccagccagtccttacagtccaacatctccaaattatagcccaacatcacct
tcttattcgccaacatctccatcatattctccttcaagtccgacctacagtcctagcagt
ccatataattctggtgtcagcccagactacagtccaagttctccacagtacagtccaagt
gcaggatactcaccaagtgcccctgggtattcgccatcatctaccagccaatacactcct
caaacaagtaccaagggtgacagagacaagaaggatggcaagggcactcgatga
DBGET
integrated database retrieval system
