Populus euphratica (Euphrates poplar): 105134082
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Entry
105134082 CDS
T05872
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105134082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
peu03036
]
105134082
Chromosome and associated proteins [BR:
peu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
105134082
Chromatin remodeling factors
NuRD complex
105134082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
DUF1087
Helicase_C
Chromo
HDA2-3
ResIII
PHD
CHDCT2
Myb_DNA-binding
PHD_4
C1_1
C1_2
SLIDE
Motif
Other DBs
NCBI-GeneID:
105134082
NCBI-ProteinID:
XP_011036653
LinkDB
All DBs
Position
Unknown
AA seq
1464 aa
AA seq
DB search
MSSLVERLRVRSERRPIYNLDESDEDADFVSGKAKKPQEKIERFVRDDAKEDSCQACGES
ENLLNCETCTYAYHSKCLLPPLKTPFPSNWRCPECVSPLNDIDKLLDSEMRPTVADESDA
SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLKTKVNNFNRQMALNNNS
EDDFVAIRPEWTTVDRILACRGVEGEKEYLVKYKELPYDECYWEFESDVSTFQPEIERFN
RIQSRSHKPSKQKSSLQDATHSKKKSKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWS
KQTHVILADEMGLGKTIQSIAFLASLFEEGISHHLVVAPLSTLRNWEREFATWAPQMNVV
MYVGSAQARAVIREYEFYYPKKHKKIKKKKSGQVVTERKQDRIKFDVLLTSYEMINLDTA
SLKPIKWECMIVDEGHRLKNKDSKLFLSMKQYYSNHRVLLTGTPLQNNLDELFMLMHFLD
AGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSS
KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQ
LVETSGKLQLLHKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWTYERIDGKVGGAE
RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG
QTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELF
ADENDEAGKSRQIHYDDAAIHRLLDREQIGDEETSLGDEEEDGFLKAFKVANFEYIDEAE
AAAEKEAQKAAMETKSTINNSERTNYWEDLLKDSYEVHKNEESNALGKGKRSRKQMVSVE
EDDLAGLEDVSSDGEDDNYEAELTDGETTSSGIQTSGIQTLKRPYKKKSRVDNMEPIPLM
EGEGRSFRVLGFNQNQRAAFVQILMRYGVGDYDWKEFAPRLKQKTYEEVENYGRLFLTHI
AEDLTDSPNFSDGVPKEGLRIQDVLIRIAVLLLIRDKARFASENPGSLLYSDDIMARYPG
LKSGKFWKQEHDSLLLHAVLKHGYGRWQAIVDDKDLKVQEIICKELNLPFIRLPVLGQAA
SQAQNGSTSNMDNAEAPSTQTQANGTGNVAAADVAHGTTDVANQAQLYQDSTILFHFRDM
QRRQVEFIKKRVLLLERGLYAEYQREYFGGDIKANEITNEEADCETMAADRSSSGSIEIS
AQMIDQLPRMESIASEEISATACDDNPDRLALPQLYNKMCMVLEQNVHESIQISLTNQPA
SLKLRQDLQPLETICEQINQFLSPSQQKSSTSEQATLGSSKHVQAESQSSQADFHSPSDQ
LKENDDTTAATEVVKMKAATTEPKLQGTIALSNEELVKETSKSPSDSPPSACPVTPPKEP
TCSPGTTEKDVGMVDMHNENDTQH
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcttagtggagaggctacgtgttagatcagaaaggaggccaatttataactta
gatgaatcagatgaagatgctgattttgtttctgggaaagctaaaaaaccccaagagaaa
attgaaagatttgtcagggatgatgcgaaggaggattcctgtcaagcttgcggagagagt
gagaatcttctgaattgtgaaacttgcacttatgcttaccattccaagtgtctgcttcca
cctctaaaaactccttttcctagcaattggagatgccctgaatgtgttagccctctgaat
gatattgataagttattggacagtgaaatgcgccctaccgtagctgatgaaagtgatgcc
tctaagctaggctcaaagcaaatttttgtaaaacagtatcttgtgaagtggaaaggctta
tcttatctacattgcacttgggtacctgagaaagagtttctaaaagctttcaagtcaaat
cctcgtctgaagactaaagtaaataatttcaatcgtcaaatggcattgaacaataactct
gaggatgactttgttgctatccgacctgaatggacaactgttgatcgaattcttgcttgc
aggggagttgagggtgagaaggaatatcttgtgaagtacaaggaacttccttatgatgaa
tgttattgggaatttgaatcagatgtatctacattccagcctgaaatagaaagatttaat
agaattcagtctaggtctcacaaaccgagtaagcaaaagagcagccttcaagatgctact
cattcaaagaagaaatcaaaagaatttcaacagtatgaacacagtcctgaatttctttct
ggaggctcattgcatccatatcagctagaagggctgaacttcttacgtttttcttggtcc
aaacaaacacatgtaatacttgctgatgagatgggcctagggaaaactatacagagtatt
gcatttttagcatctctttttgaagaaggcatctctcatcatttggtagtagctccactt
tcaacattgcgaaactgggaacgtgaatttgcaacatgggcgcctcaaatgaatgttgtt
atgtatgttggctctgcacaagctcgtgctgtcattagggaatatgaattttactacccc
aagaagcacaagaagatcaagaaaaagaaatctggtcaagttgtcactgaaagaaagcaa
gatagaataaaatttgatgtgcttctaacgtcttatgagatgattaacttagacacagca
tcgctgaaaccaataaagtgggagtgcatgattgttgatgaaggtcatcgtctaaaaaat
aaggactcaaaattgtttctctcgatgaagcagtactatagtaaccatcgtgtgcttttg
actggaactcctcttcagaacaatctggatgaacttttcatgctcatgcatttccttgat
gctgggaagtttgcgagtttagaagagttccaagaggagtttaaggatataaatcaagag
gagcagatatcaagacttcataaaatgttggctccccatctccttagaagggtgaagaag
gatgtcatgaaggagctacctccaaagaaggaactcattctacgtgttgaactaagtagt
aagcagaaggaatattacaaggccattctgactcgtaactatcaaatactgactcgacgt
ggcggtgcacagatttctcttatcaatgtggttatggaattgcgcaaactctgttgtcat
ccttatatgttagaaggagtggaaccagatatagaagacaccaatgaatctttcaagcag
ctcgtggaaacttctgggaaattgcaactgttgcacaaaatgatggtgagacttaaagaa
caaggacatagagttctcatttactcacaatttcagcacatgctggacctactggaagat
tactgcactcataagaaatggacatatgaacggatagatggaaaggttggtggagctgag
agacaaatacgcatagatcgatttaatgccaaaaattcttcaagattttgctttcttctc
tcaactagagctggaggactaggaataaatcttgcaactgctgatacagttattatatat
gatagtgattggaatcctcatgctgatctccaagcaatggctagggcacatagacttggg
caaaccaacaaggtaatgatttataggctcataacccgaggaactattgaggaacggatg
atgcagatgactaagaagaaaatggttttagagcaccttgttgttgggaggctgaaggcg
caaaatattaaccaagaagagctagatgacatcataagatatggttcaaaggagcttttt
gctgatgagaatgatgaagcaggaaaatcacgtcaaattcactatgacgatgctgctata
catcgattacttgaccgtgaacaaattggagatgaagaaacgtcattgggtgatgaagag
gaagatggatttttaaaggcgtttaaggttgcaaattttgagtatattgacgaagcagag
gctgcagcagagaaggaagctcagaaggcagcaatggaaactaaatctaccataaacaat
tctgaaagaacaaactattgggaggacttgctaaaagacagttatgaagtgcacaaaaac
gaggagtctaatgctttgggcaaaggaaagagaagccgtaagcagatggtctctgttgaa
gaagatgaccttgctggtctggaagatgtaagctctgatggcgaggatgataactatgaa
gctgagttgactgatggtgaaacaacttcatctggaattcagacatctggaattcagaca
ttaaaaaggccttataagaagaagagtcgagtggataatatggagccaattcctctgatg
gaaggtgaaggcagatcatttagagtattgggttttaatcaaaatcagagggctgcattt
gtacaaattttgatgaggtatggggtcggagactatgactggaaggagtttgcccctcgt
ttgaaacagaagacatatgaagaagtagaaaattatggaagattattcttgacgcacata
gcggaagatctaacggactcacctaatttttcagatggtgttcctaaagagggtcttaga
atacaagatgtacttattaggattgctgtcctgcttttgataagggataaggcaaggttt
gcatcagagaacccaggcagcctcctttactcagatgacattatggcgcgctacccaggc
ctgaagagtggaaaattttggaaacaagagcatgattctttgttacttcatgcggtattg
aagcatggatatggaagatggcaagctattgttgatgacaaggacttaaaggttcaagaa
attatttgtaaagagttgaatcttccttttataagactacctgtccttggacaagctgct
tctcaagcacaaaacggttctacttctaacatggataatgcagaagctcctagcacccag
acacaagcaaatggtactggaaatgtagcagcagctgatgttgctcatggaacaactgat
gttgcaaatcaagcacagttatatcaagactcaactatcttatttcattttagagatatg
cagagacgacaggtagagttcattaagaaaagagtgcttcttttggagagaggactctat
gcagagtatcagagagaatactttggtggtgatataaaagcaaatgagattacaaatgaa
gaggctgattgtgaaacaatggcggctgacagatcaagttcaggctccatagagattagt
gctcaaatgattgaccagttgcctcgaatggaatcaattgcatcagaagaaatttcagca
actgcgtgtgatgacaatcccgatagattggcattacctcagctttataacaagatgtgc
atggtgttggagcaaaacgttcatgaatcaattcagatatccttgaccaaccaacctgca
agtctcaagttgagacaggatcttcagccattagagacgatttgtgaacagataaatcaa
tttctctctccttcacaacagaaatcttctacttcagaacaggctactcttggttcaagc
aaacatgtccaagctgaatcacagagcagtcaggcagatttccattcaccatctgaccag
ctgaaggagaatgacgacaccactgctgctaccgaagttgtcaagatgaaagctgcaaca
acagagccaaaattgcaaggaaccattgcattatcaaacgaagaactagttaaagaaaca
agtaaatctcctagtgattctccaccttctgcatgcccagttactcctccaaaagaacca
acttgttcaccagggacaactgaaaaggatgtgggaatggtcgatatgcataatgaaaat
gacacccaacactga
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integrated database retrieval system
