Pedobacter endophyticus: IZT61_12885
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Entry
IZT61_12885 CDS
T07452
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
pex
Pedobacter endophyticus
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pex03021
]
IZT61_12885
Transcription machinery [BR:
pex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IZT61_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
GerE
DUF2089
Sigma70_ECF
DUF1492
UPF0122
Motif
Other DBs
NCBI-ProteinID:
QPH37995
UniProt:
A0A7U3Q3N5
LinkDB
All DBs
Position
3188716..3189297
Genome browser
AA seq
193 aa
AA seq
DB search
MEQGIEDLALIQDVLNGNPAQYALLVKRHQRFVFTLALRFSKNREDAEEIAQDCFVKAYK
ALGTFKQTSKFSTWLYTITYTTAMTFLRKKRLNTASLNDEDTFVQLENHTSAFNANGYEK
HNRNKFLAQAINLLMPDDATIITLFYQGEQSLEEIGAALNMEANTVKVKLHRARQRLKEK
LQFLLKDEVKELL
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaggaattgaagatttagcgctgatccaagatgtattgaacggaaaccctgct
caatatgctttgctggttaagcgccatcagcggtttgtgtttacccttgcgctcaggttt
tcgaaaaacagagaagatgccgaagagattgcgcaagactgttttgttaaagcgtataaa
gcattgggtacgtttaagcaaacatcgaaatttagcacatggctctacaccattacctac
accaccgcaatgacttttttgcgtaaaaaacgtttaaataccgcttctttgaatgatgaa
gatacttttgttcagctcgaaaaccatacctcagcctttaatgcgaatggttacgaaaag
cacaaccgtaataagtttttagcgcaggccattaacttgcttatgccagacgacgctaca
attataaccctcttttaccagggcgaacaaagtttggaggaaattggtgccgcactgaac
atggaggcaaacacggtgaaggtaaaattgcaccgggcccgacaaaggcttaaagagaaa
ttacaatttttgttaaaagatgaagtaaaggagttactatga
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