KEGG   Pseudomonas synxantha LBUM223: VO64_0156Help
Entry
VO64_0156         CDS       T03769                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfb  Pseudomonas synxantha LBUM223
Pathway
pfb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    VO64_0156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfb03400]
    VO64_0156
Enzymes [BR:pfb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VO64_0156
DNA repair and recombination proteins [BR:pfb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     VO64_0156
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AKA80702
UniProt: A0A0E3KE34
LinkDB All DBs
Position
complement(187160..189658)
Genome map
AA seq 832 aa AA seqDB search
MAKPLSEYNRKRDFEITAEPAGSSPATKRKTSALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPTQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGLWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDQQARPAVDYDIVQAQPD
SVLSDASVGKVKAASKTRKAAKPKKATSALPDQFSPQLATLVDRAPAGDWLYEIKFDGYR
MLARIRDGEVRLFTRNGNDWTERLPRQVKALEALKLKDSWLDGEVVSLNADGLPDFQALQ
NAFDIGRSLDIVYYLFDAPFLDGQDLRNVAVEERRAALKSALSGSRSKLLRFSEAFAANQ
RDIFESACDLALEGVIGKRAGSLYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGA
LLLAVNDDNGLVYAGRVGTGFDQAALKSIYAKLTALERKTSPLEKPLTSAQARGVHWVEP
TLVGEVQFTEWTREGVVRQAAFLGLRTDKPAAQIIHEQPRTAKFLEKPKKPKAKTTESGV
KVTHPERVIDTQSGTQKQQLAQFYAGISQWILPFLRSRPVSLLRAPEGIEGEQFFQKHSE
RMAIPHIKQLDQALDPGHARLMEIDSQDALVGAVQMGTVELHTWGATTDKIETPDLFVLD
LDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTVKAFAK
AMAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSR
DELKDLRGAQQWTVANLHERLQGLKEDPWAGYANRQKISKKMWDRLGAKPPQ
NT seq 2499 nt NT seq  +upstreamnt  +downstreamnt
atggcaaagcccctgagcgagtacaaccgcaaacgcgattttgagatcaccgccgaaccg
gccggcagttcaccagccacaaagcgcaaaacctcggccctgagttttgtaatccagaag
catgatgcgcgcaatctgcactatgactttcgcttggagctcgacggtgtgctgttgagc
tgggccgtgcccaagggcccgagcctggatccgacccagaagcgcctggcggtgcatgtc
gaggaccatcccctgagctacggcagtttcgagggcagcattcccgccggccaatacggc
gccggggatgtaatcgtgtgggaccgtggcttatggcaaccccatgacgatccgcacaag
gcctacgcagccggcaaactcaagttcactctggttggcgagaaactctcgggggactgg
gccctggtgcgcacccggctcaaaggcagcggtgacaaggagcaatggttgctgatcaag
gaaaaagaccagcaggcccgcccggcggtcgactacgatatcgtccaggcccagcccgac
agtgtgctcagcgacgcctcggtgggcaaagtcaaggccgccagcaaaaccaggaaagct
gcaaaacccaagaaagcaacctccgcccttccagaccagttctccccgcaactggcaacc
ctggtcgaccgcgcccctgctggcgactggctgtacgagatcaaattcgacggctaccgc
atgctggcacgtatccgcgacggtgaggtgcgcctgtttacccgcaacggcaacgattgg
accgagcgcttgccgcgccaggtgaaagcgttggaggcgctcaagctcaaggacagttgg
ctggacggtgaagtggtcagtctcaacgccgacggtctgccggatttccaggcgctgcag
aatgccttcgatattggccgcagcctggatatcgtctattacctgttcgatgcgcccttc
cttgatgggcaagacctgcgcaacgtggcggtagaagaacgccgggccgccctcaagtcg
gcgctttccggcagccgtagcaagctgctgcgcttctccgaagctttcgccgccaaccag
cgcgatatcttcgaaagtgcctgtgacctggccctcgaaggtgtgatcggcaagcgcgcc
ggcagcctctacgtatcaagccgcagcgccgactggatcaagctcaaatgccgcttgcgc
caggagttcgtgattgtcggctacacccgcccgcaaggttcgcgcagtgggtttggcgca
ctgttgctggcggtcaacgacgacaacgggctggtttacgccgggcgtgtaggcaccggc
tttgatcaggcggcgctgaagagcatctacgccaaactcaccgcccttgaacgcaaaacc
tcgccactggaaaagccactgaccagcgctcaggcccgaggcgtgcattgggttgagccg
acgctggtgggcgaagtgcaatttactgagtggacccgtgagggtgtggtgcgccaggcg
gcgtttctcggtttacgcacggataagcccgccgcacagatcatccatgaacaaccacgc
acggcaaaattcctggagaagcccaagaagcccaaggcaaaaaccaccgagagtggggtg
aaagtcacccaccccgagcgcgtcatcgacacacaaagcggcacgcagaaacagcaactg
gcacagttctatgccggcatcagccaatggatcttgccattcctgcgcagccggcccgtg
tcgctgctcagggcaccagaaggcattgagggcgaacagttctttcagaagcactccgag
cgcatggccattccccacatcaagcaacttgaccaggcgctggaccctggccacgcgcgc
ctgatggaaatcgacagccaggacgcgttggtcggcgctgtgcaaatgggcaccgtcgag
ttgcatacctggggcgccacgacggacaagattgaaacccccgacctgttcgtgctggac
ctcgacccggatccggccttgccgtggaaagccatgctggaggcggcacagttgaccttg
tcggtactcgatgaactgggtttgcaagccttcgtcaagaccagcggcggcaaaggcctg
cacctgattgtgccgctggcccggcgcgatggctgggacaccgtgaaagcattcgccaag
gcaatggcccagttcatgacccagcagctgccggagcgtttcaccgccaccagcggccca
aaaaaccgcgtgggcaagatctttatcgattacctgcgcaacgcccgcggcgccagtacc
gtggcagcttattccgtgcgggcgcggccgggcttgccggtgtcggtgccggtcagtcgg
gatgaattgaaagacttgcgtggcgcccagcagtggacggtggcgaacctgcacgagcgg
ctgcagggtctgaaggaggatccgtgggccggctacgccaatcgacagaagatcagcaaa
aagatgtgggacaggctgggcgcgaagccaccgcagtga

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