Pseudomonas synxantha LBUM223: VO64_2092
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Entry
VO64_2092 CDS
T03769
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO64_2092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfb03019
]
VO64_2092
03016 Transfer RNA biogenesis [BR:
pfb03016
]
VO64_2092
Enzymes [BR:
pfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VO64_2092
Messenger RNA biogenesis [BR:
pfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VO64_2092
Transfer RNA biogenesis [BR:
pfb03016
]
Prokaryotic type
tRNA degradation factors
VO64_2092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AKA82638
LinkDB
All DBs
Position
complement(2339926..2341944)
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AA seq
672 aa
AA seq
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MLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKET
LTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPI
GAARVAFHESTGYLLNPSYEQQKASSLDMVVAGTSEAVLMVESEAKELTEDQMLGAVLFA
HDEFQVVINAVKELAAEAAKPTWTWAAAPEATDLLGAIRSEFGAAISDAYTITVKADRYA
RLGELKDQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLN
IEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVG
ECGRMGGAGRREIGHGRLARRSIAAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASL
ALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTAKGVTALQMD
IKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDV
IGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQRVLGITAEAEIGKIYVGK
VERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLS
IKDVAAAKASGV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgctggttaccgttgacgacgacgttaccgtactggtgaccgttgttggcgccaagacc
gctgacccgagcaaaggcttcttccctctgtccgttcactaccaggaaaagacttacgct
gccggtaagatccctggcggtttcttcaagcgcgaaggccgtccttccgagaaagaaacc
ctgacttcccgactgatcgatcgcccgatccgtccgctgttcccagaaggcttcatgaac
gaagtgcaggtcgtctgcaccgtggtttccaccagcaagaagaccgatccggacatcgca
gcgatgatcggtacttcggctgcgctggctatctccggtattccgtttgatggccctatc
ggcgccgctcgcgttgctttccacgaaagcacgggctacctgctgaacccatcctacgag
cagcagaaagcttcgagcctggacatggtcgttgccggtacttccgaagccgtactgatg
gttgagtcggaagccaaagagctgaccgaagaccagatgctgggcgccgtactgtttgct
cacgacgagttccaggttgtgatcaacgcggtcaaggaattggctgccgaagctgccaag
ccaacctggacctgggctgctgccccggaagccaccgacctgctgggggctatccgctcc
gagttcggcgcggctatctccgatgcctacaccatcaccgtcaaggccgaccgttacgct
cgcctgggcgagttgaaggatcaggtcgttgccaagctgtccggcgaagaaggccagcct
tctgccagcgacgtcaaggctgcattcggtgaaatcgaataccgcaccgttcgcgaaaac
atcgttaacggtaagccacgtatcgacggtcgtgacactcgcaccgtgcgcccgctgaac
atcgaagttggcgtgctgccgaaaactcacggttcggcgctgttcacccgtggcgaaacc
caggccctggtggttgcgaccctgggtactgcccgtgacgcacagctgctggacaccctg
gaaggcgagaaaaaagacccgttcatgctgcactacaacttccctccgttctcggtgggc
gagtgtggtcgtatggggggggctggtcgtcgtgaaatcggtcacggccgcctggcccgt
cgttcgattgcagcgatgttgccggctgctgacgtgttcccgtacaccatccgtgttgtg
tcggaaatcactgaatccaacggttccagctcgatggcctccgtttgtggtgcttccctg
gcgctgatggacgcgggtgtgccgatgaaggcaccggttgccggtatcgccatgggcctg
gtcaaagagggcgagaagttcgccatcctgaccgacatcctgggtgacgaagaccacttg
ggcgacatggacttcaaagtagccggtaccgctaaaggtgttaccgcgctgcagatggac
atcaagatcaagggcatcaccgaagagatcatggaaatcgccctgggccaagccctggaa
gcgcgcctgaacatcctcggccagatgaaccagatcattggtcagtcccgtaccgaactg
tcggaaaatgctccgaccatgatcgcgatgaaaatcgacaccgacaaaatccgtgatgtt
atcggtaaaggcggcgcgaccatccgtgcgatctgtgaagagaccaaggcctcgatcgac
atcgaagacgacggttcgatcaagatcttcggcgaaaccaaggaagcggctgaagctgca
cgccagcgcgtcctgggtatcaccgctgaggctgagatcggcaagatctacgtcggcaag
gttgagcgcatcgtcgacttcggcgcattcgtcaacatccttccaggcaaagacggtctg
gttcacatctccatgctgagcgacgctcgcgttgagaaagtgaccgacattctgaaagaa
ggccaggaagttgaagtgttggtactggacgtggataaccgcggccgtatcaagctgtcc
atcaaagacgtagcagcagccaaggcttcgggcgtttaa
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