KEGG   Pseudomonas fluorescens A506: PflA506_1430Help
Entry
PflA506_1430      CDS       T02114                                 

Gene name
ligD_2
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfc  Pseudomonas fluorescens A506
Pathway
pfc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PflA506_1430 (ligD_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfc03400]
    PflA506_1430 (ligD_2)
Enzymes [BR:pfc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PflA506_1430 (ligD_2)
DNA repair and recombination proteins [BR:pfc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PflA506_1430 (ligD_2)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Tudor_3
Motif
Other DBs
NCBI-ProteinID: AFJ58044
LinkDB All DBs
Position
complement(1597854..1600415)
Genome map
AA seq 853 aa AA seqDB search
MTDALNEYNKKRDFDATPEPSGAKKSTRKKKAEDHALQFCIQKHDASRLHYDFRIEIEGT
LKSWAVPKGPSLDPQVKRLAMEVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGIWKCIGD
PVESYKKGKLKFELEGEKLGGLWNLVRTHQEGKSKPWFLIKHQDSAAKPEAEFDVVKELP
DSVLSDRTIIPKKRGKQPKAKAVEEVPEPRKRAKTGKLTGAKPAPMPDLIKPQLATLVET
APAGDWRYEIKFDGYRMMARIDNGEVKLFTRNGHDWTSKLPRQAEALASLALQSAWLDGE
VIAADDEGVPSFQILQNAFESGKSQAIVFYLFDMPYLNGVDLREVPVEERRAALAQVVER
SEDDIIRFSEDFGEEASDLLTSVCQMHMEGLIGKRAGSTYVSRRSDNWIKLKCKHRQEFV
VVGYSEPKGARTSFGALLLGLHDKDSGELRYSGKVGTGFNERTLRTILEQLKPLETSKPA
VVNPPTGADARGVHWLKPELLAEVAYAEITKDGSVRHSVFHGLRNDKPAKEITEETPVPA
SDVQGKKTKPAAKKKPVKADPKPTSGKIRITHLDRVIDASSGSTKMQLAEYYVSIADWIL
PTLHDRPIALVRAPEGIAGELFFQKNVERLPIPGIETVEGESVMLINNAEALVGAVQKST
IEFHSWNAKAPDLDRPDRFVLDLDPDPSLPWKSMVEATTLTLTILDELGLKSFVKTSGGK
GIHIVVPLTPKDDWETVKGFSQKIVQHMAKLIPDRFSAVSGPKNRVGKIFIDYLRNGKGA
TTINAYAARTREGLPVSVPLFKEEVKEIKGANIWNIHNLHERLGELGEDPWKDYGKIKQT
ITADMRRMIGLKK
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atgactgacgccctgaacgagtacaacaagaagcgtgatttcgatgccaccccggaacct
tcaggtgcaaagaaaagcacccgaaaaaagaaggcagaagaccatgctctgcagttctgc
atccaaaagcatgatgcctcccgtctgcactatgattttcgaatcgagatcgaaggcact
ctgaaaagctgggcagttccgaaaggcccaagtctagatccccaggtaaagcgtctggca
atggaggttgaagatcacccacttgattacgcaacctttgaggggaacatcccggaaggt
cattacggcgccggtgacgtgattgtgtgggatcggggaatatggaaatgcataggtgat
ccagttgagtcgtacaaaaaggggaagctgaaatttgagcttgagggcgaaaagctcggc
ggcctttggaaccttgtcaggacacaccaagagggcaaatcaaagccttggtttctcatc
aagcaccaggactcggctgcaaagcccgaggctgaatttgatgtggtaaaagagctgcca
gattcagttctgagtgatcgcacaatcattccgaaaaagcggggaaaacagcccaaggcc
aaagctgttgaagaggtgccggagccgcgcaaacgagctaaaacaggcaagctcactggc
gctaaaccagcaccaatgcccgacctaatcaaaccccagctcgctaccctagtggagacg
gcccccgctggtgactggcgttacgaaatcaagtttgatggctatcgaatgatggcaaga
attgataacggtgaggtgaagctatttacccgcaacggccacgattggacttccaagctg
ccccggcaagcagaagcattggcaagcctggctctccaatcagcatggcttgatggggaa
gtcattgccgctgacgatgaaggcgtacccagcttccagattctccagaacgctttcgag
tcaggtaagagccaagccatcgttttttacctgttcgacatgccctacctcaacggggta
gacctccgagaagttcctgtcgaagaaagacgtgcagcccttgcccaggtcgttgaacgc
agcgaagacgacatcatcaggttctcagaggattttggtgaggaagccagcgaccttctt
acctctgtctgtcaaatgcacatggagggtttgataggaaaacgtgcggggagtacatat
gtatcccgccgctcggataactggataaagctgaaatgtaagcatcggcaagagttcgtt
gtggtgggctatagcgagcccaaaggggctagaacgtcgtttggtgcacttctgctggga
ctgcatgacaaggacagcggcgagcttcgctacagcggtaaagtgggcactggcttcaac
gagcggaccctacgaaccatccttgaacagctaaagcctttggagacatctaaacccgcc
gtagtaaatccacctaccggggcagatgctcgtggtgtgcattggctgaaacctgaactg
ttggccgaggtggcctatgccgaaatcacgaaggatggttcggtacggcattcggttttc
cacggattacggaacgacaaacctgccaaggaaataaccgaagaaacaccagtgccggca
tcggatgtgcagggtaaaaaaacaaagcctgcggcaaagaaaaaacctgtcaaagctgac
ccaaagcccacctctggaaaaattcgtatcactcaccttgacagggttatagacgcatcc
agcggctctaccaaaatgcagctcgcagagtactacgtgagtattgccgactggattctt
cccacactgcatgacagacccatagcccttgtacgtgcccctgaaggcatagccggagag
ctgttctttcagaagaatgttgagcgtctacctatacccggcattgagacagtcgagggt
gagtcagtgatgctcatcaacaacgctgaagcactcgttggtgctgtacagaagagtacc
attgagttccattcctggaatgcaaaagcaccggatttggatcgtcctgatcgattcgtg
ctggacctcgaccctgatccatcattgccctggaaaagcatggttgaggctacaacccta
acgctgaccatccttgatgagctggggttaaagtcattcgtcaaaacgagtggcggcaag
gggatccatattgtggtcccactcacccccaaggacgattgggaaactgtgaaggggttc
agccagaagattgttcagcacatggccaagctcatccctgatcgattttcagccgtatca
ggcccgaagaatcgtgttggcaaaatcttcatcgactatctgcgcaacggcaaaggagct
actactatcaatgcctatgcagctcgtacacgcgaagggttgccagtgtcggtgcctctc
ttcaaagaagaagtgaaggagataaaaggcgcgaacatctggaatatacacaatctccac
gaacggcttggagagctgggggaagacccgtggaaggactacggcaaaataaaacaaacg
ataactgctgatatgcgtcgaatgattggactcaaaaaatag

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