KEGG   Pseudomonas fluorescens A506: PflA506_2574Help
Entry
PflA506_2574      CDS       T02114                                 

Gene name
ligD_1
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfc  Pseudomonas fluorescens A506
Pathway
pfc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PflA506_2574 (ligD_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfc03400]
    PflA506_2574 (ligD_1)
Enzymes [BR:pfc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PflA506_2574 (ligD_1)
DNA repair and recombination proteins [BR:pfc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PflA506_2574 (ligD_1)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AFJ58339
LinkDB All DBs
Position
complement(2829082..2831595)
Genome map
AA seq 837 aa AA seqDB search
MAKPLSEYNRKRDFKITAEPAGSSPASKRNVSALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKENDQQARPASEFDIVQAEPA
SVLSDAVVGKPKAKAKPKAAPKAKTPKRIAALPDEFAPQLATLVDRAPEGDWRYEIKFDG
YRIMARIRDGEVRLFTRNGHDWTERLPRQCKALQALKLKDSWLDGEVVSLNGDGLPDFQA
LQNAFDIGRSLDIVYYLFDAPFLNGRDQREDPVEERRAALKSALSASRSKLLRFSEAFAA
SQRDIFESACDLALEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVIVGYTRPQGSRSGF
GALLLAVNDDTGLVYAGRVGTGFDQAALKSIYAKLTPLERKDSPLQKPLTSAQARGVHWV
EPSLVGEVQFAEWTREGVVRQAAFVGLRTDKPASQIIHEQPRAAKSVKAPETSKAGKAQA
TVKSVKITHPERIIDKHSSTQKQQLAQFYTDISEWILPFLRARAVSLLRAPEGIEGEQFF
QKHSERMAIPHIKQLDQALDPGHARLMEIDSVEALVGAVQMGTVEFHTWGATADKIETPD
LFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTV
KAFAKAIAQFMTRQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVS
VPVGREELKGLRGAQQWTVANLHQRLQTLKDDPWAGYANRQKISKKMWDKLGAQPPG
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atggcaaagcccctgagtgagtacaatcgcaagcgcgatttcaagatcaccgccgaaccc
gccggcagctcacccgccagcaaacgcaacgtctcggccctcagcttcgtgattcaaaag
cacgatgcgcgcaacctgcactacgactttcgcctggaactcgatggcgtgctgctgagc
tgggcggtgcccaagggcccaagcctggacccgagccaaaaacgcctggcggtgcatgtt
gaagaccacccactgagctatggcagtttcgagggcagcattcccgccggccaatacggt
gcgggggatgtgatcgtatgggaccgaggcatttggcagccccacgatgatccgcgcaaa
gcctacgcggcgggcaagctcaaattcaccctggtcggtgaaaaactctccggtgactgg
gcgctggtacgcacccggctcaagggcagcggcgacaaggagcaatggctgttgatcaag
gaaaacgatcagcaggcgcgcccggcctctgagttcgatatcgtccaggccgagcccgcc
agcgtgctcagcgatgcggtggtgggtaagccaaaggccaaggccaaacccaaggccgcg
ccaaaagccaaaacgcccaagcgcatcgctgccctgccggatgagtttgccccccaattg
gcaaccttggtggaccgggcgcccgaaggtgattggcgctacgagatcaagttcgacggc
taccgcatcatggcgcgcattcgcgacggcgaagtgcgcctgttcacccgtaacggccac
gactggaccgaacgcctgccacgtcagtgcaaagccttgcaagccctcaagctcaaggac
agttggctggatggcgaagtggtcagcctcaatggcgacgggctgccggatttccaggcg
ctgcaaaacgcgttcgatatcggccgcagcctggacattgtctattacctgttcgacgca
ccgtttttgaacggccgcgaccagcgtgaagacccggtcgaagagcgtcgggctgcgctt
aaatctgcgctgtccgccagccgaagcaaactgctgcgcttctccgaagcctttgccgcc
agccagcgcgatattttcgagagcgcctgtgacctggcgctcgaaggcgtgatcggcaag
cgcgccggcagcccctacgtgtcgcggcgcagtgccgactggatcaagctcaaatgccgc
ctgcgccaggagttcgtgattgtcggctatacccgcccccaaggttcgcgcagcggcttt
ggggcgctgctgttggcggtcaacgatgacaccggcctggtatatgccgggcgggtgggc
acgggctttgatcaagcggcgctgaaaagtatctatgccaagctcaccccgcttgagcgc
aaggactcgcccctgcaaaaaccattgaccagtgcccaggcccgtggcgtgcattgggtt
gagccgagcctggtcggcgaggtgcaatttgccgaatggacccgcgaaggcgtggtgcgc
caagccgcgtttgtgggcctgcgcaccgacaagccagcctcgcagatcattcatgaacag
ccgcgcgcggccaagtcggtcaaggcacccgaaacgtcgaaagccggtaaagcgcaggca
acggtgaagagcgtgaaaatcactcaccccgagcgcattatcgacaagcacagcagcacg
caaaaacagcagctcgcgcagttctacaccgatatcagcgaatggatcctgcccttcctg
cgcgcacgtgccgtgtcattgctgcgggcgcctgaagggatcgaaggtgagcagttcttc
cagaagcactcagagcgtatggccatcccccacatcaagcaattggaccaggcgctggac
ccaggccatgcgcgcctgatggaaatagacagcgtggaggccctggtcggcgcggtgcaa
atgggtaccgtcgaatttcacacctggggcgccactgcagacaagattgaaacgcctgac
ctgtttgttctcgatctcgacccggacccggccctgccctggaaagccatgctggaagcg
gcccaactgaccctgtcggtactcgatgagctgggcttgcaagctttcgtcaaaaccagc
ggcggcaagggcctgcacttgatcgtgccgttggcccggcgcgacggctgggacaccgtg
aaggcgttcgccaaagccattgcccaattcatgacccggcaactgcccgaacgctttacc
gccaccagtggccccaagaaccgcgtcggcaagatatttatcgattacctgcgcaacgcc
cgtggcgccagtaccgtagcggcgtattccgtgcgggcccgcccgggcctgccagtgtcg
gtgccggtgggtcgagaggagttgaaaggattgcgtggcgcccagcagtggacagtggcg
aacctgcatcagcggctgcaaacgttgaaggatgacccctgggcggggtatgccaatcga
cagaagatcagcaaaaaaatgtgggacaagctgggcgcgcaaccccctgggtga

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