Paludibaculum fermentans: IRI77_08240
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Entry
IRI77_08240 CDS
T06895
Name
(GenBank) PBP1A family penicillin-binding protein
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
pfer
Paludibaculum fermentans
Pathway
pfer00550
Peptidoglycan biosynthesis
pfer01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
IRI77_08240
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pfer01003
]
IRI77_08240
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfer01011
]
IRI77_08240
Enzymes [BR:
pfer01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
IRI77_08240
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
IRI77_08240
Glycosyltransferases [BR:
pfer01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
IRI77_08240
Peptidoglycan biosynthesis and degradation proteins [BR:
pfer01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
IRI77_08240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
UvrB_inter
UB2H
DUF2291
PPL4
Motif
Other DBs
NCBI-ProteinID:
QOY89931
UniProt:
A0A7S7SMX0
LinkDB
All DBs
Position
complement(2074888..2077374)
Genome browser
AA seq
828 aa
AA seq
DB search
MRIQVPRKALLVRFFLHPVGKSLLGISALALIVFVGAFSYYWVKYSRLIDQKLKEGPFTE
TAQLFATPEPIAVGDSLSADELVGALKRRGYTESRSNRLGWYHVRQDGVEIFPGVDAYIN
SEPGVVFLSGGTVTRIISNRDNTERQRYFLDPELITNLFDRKREKRRLVRYEDIPQILVH
AVISIEDKRFFEHSGFDPLRIIRTAWVDVTQNRRYGASTISMQTARNLWLTQDKTASRKA
AEILITLQIEQKLTKEQIFEFYSNQVDLGQHRSFAVHGFGEAAQVYFSKDIRELRLEEAA
LLAGLIQRPNYFNPYRHPERAMQRRNIVLKLMRENGFITDLQFIEASKAPVKVVEGGAES
TDAPYFVDLVNDDLQENFSDIDFQTSSYRIYTTLDMKLQRDAVEAVNIGMAEVDSLLSKR
KKKYPQAQVAMLVLDPHTAEIKALIGGRNYGASQLNRVLSKRQPGSAFKPFVYASVLSTT
LEGQNASVTPVTQVVDEPTTFFYDGQEYEPGNYHGAFYGLVNMRQALSKSMNIPTVKFAE
MAGYGNVANLARRAGMEGVRATPALALGSYEVTPLDIAGAYTIFSNGGVYTKQNLIKEVR
SSSGGLIHEYRPVRRGVLDPRVAYMVVNLMEEVLRSGTGAGARARGFGLPAAGKTGTSHD
AWFAGFTSKLLCIVWVGFDDNQELPLEGAQAALPIWTEFMKRGHRYREYRGVQQFEAPDG
IATVDIDPLSGQLATGACPNPRPEVFIAGTQPVDLCHLHGGGGRTQVASWDTPEPAAAAQ
APASSGSHSSSRPSRPKAEEPVADAKPAQPQPKPEKKGIGGWFRAIFK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtatacaggtcccccgcaaagccctcctcgtccgcttctttctacatcctgttgga
aaatcgctgctgggcatcagcgccctcgccctcatcgttttcgtcggcgctttcagctac
tactgggtgaagtactcgcggttgatcgaccagaagctgaaagaggggccgttcactgag
acggcgcagctgtttgccacgccggaaccgatcgcggtgggcgacagcctctccgcggac
gagctggtgggcgcgttgaagcggcgcggatacactgagtcgcgcagcaaccggctgggc
tggtatcacgtgcggcaggacggcgtggagatcttccccggcgtcgatgcgtacatcaac
agcgaaccgggcgtcgttttcctgagcggcggcacagtgacgcggattatctccaaccgg
gataacacggagcggcagcggtacttcctggatccggaactgatcaccaatctgttcgac
cgcaagcgggaaaagcggcggctggtgcgctacgaggacattccgcagatcctggtgcac
gcggtgatctcgatcgaggacaagcggtttttcgagcattccgggttcgatccgctgcgc
atcatccggacggcctgggtggatgtgacgcagaaccggcggtacggtgcgtcgaccatc
agcatgcagacggctcgcaatttgtggctgacgcaggacaagaccgcctccagaaaagcg
gccgagatcctgattacgctgcagattgagcagaagctgacgaaggaacagatcttcgag
ttctactcgaaccaggtggatctggggcagcaccgcagtttcgccgtccacgggtttggc
gaagcggcgcaggtctatttttccaaggacatccgggaactgcgcctggaagaggcggcg
ctgctggccgggctgatccagcgcccgaactacttcaatccttaccggcatcctgagcgg
gcgatgcagcggcggaacatcgtgctcaagctgatgcgggagaacgggttcatcaccgat
ctgcagttcatcgaggcgtccaaggctccggtgaaggtcgtggagggtggggcggaatcg
acggatgccccgtactttgtggacctggtgaacgacgacctgcaggagaacttctcggac
atcgatttccagacgagttcgtacaggatctatacaacgctggacatgaagttgcagcgg
gacgcggtcgaagccgtgaacatcgggatggccgaggtggacagcctgctgtcgaagcgg
aagaagaagtatccgcaggcgcaggtggccatgctggtgctggatccgcacacggcggag
atcaaggcactgatcggcgggcggaactacggagccagccagttgaatcgggtgttgtcg
aagcggcagccgggatcggcgttcaagccctttgtctacgcgagcgtgctgagcacgacg
ctggaagggcagaatgcgtcggtcacgccggtgacccaggtggtggatgagccgacgacg
ttcttctacgacgggcaggagtatgagcccggcaactatcacggagcgttctatggcctg
gtgaacatgcgccaggcactgtcgaagtcgatgaacattccgacggtgaagttcgccgag
atggccggatatggaaacgtggcgaacctggcgcgcagggcagggatggagggcgtccgg
gcgacgccggcgctggccctgggctcgtatgaagtgacgccgctggatattgccggtgcg
tatacgatcttctcgaacggcggcgtgtacaccaagcagaatctgatcaaggaagtccgc
agctcctcgggcgggctgatccacgaataccggccggtgcgtcgtggggtgttggatccg
cgtgtcgcctacatggtggtgaacctgatggaagaggtgctgcggtcgggcacgggcgcg
ggcgcacgggcacgcggcttcgggttgccggcggccggcaagacaggtacctcgcatgat
gcgtggtttgccggattcacctcgaaactgctttgtattgtgtgggttggcttcgacgac
aaccaggaactgccgctggaaggcgcgcaggcggcgctgcccatctggacggagttcatg
aagcgggggcaccgctaccgggagtaccggggcgtccagcagttcgaagctccggatgga
attgcgacggtggatatcgacccgttgagcggacagttggccacgggcgcctgcccgaat
ccgcggcccgaggtctttatcgccggcacgcaacccgtggatttgtgccatttgcacggc
ggcggcggccggacccaggtggccagttgggacactccggagccggcggcggccgcccag
gcacccgcttcttccgggtcgcactcctcatcccgcccgtcgaggcccaaagcggaagaa
cctgttgcagatgcaaaacctgcccagccgcaaccaaagcctgaaaagaagggtatcggc
ggctggtttcgggctatatttaagtag
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