KEGG   Pseudomonas fluorescens PICF7: PFLUOLIPICF724270Help
Entry
PFLUOLIPICF724270 CDS       T03767                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pff  Pseudomonas fluorescens PICF7
Pathway
pff03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pff00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    PFLUOLIPICF724270 (ligD)
Enzymes [BR:pff01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFLUOLIPICF724270 (ligD)
DNA repair and recombination proteins [BR:pff03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PFLUOLIPICF724270 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJZ96157
LinkDB All DBs
Position
5196012..5198471
Genome map
AA seq 819 aa AA seqDB search
MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN
SVLSDASVGKPKTRAKARKTALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAG
EVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRS
LDIVYYLFDAPFLNGEDQRQAPVEERRAALKEALTGSRSTLLRYSEAFTAHHRDIFESAC
DLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNND
TGLVYAGRVGTGFDQAALKAIYAQLTPLDCETSPLAKPLSSAQARGVHWVKPTLVAQVQF
AEWTREGVVRQAAFVGLRTDKPVAQVVHEQPRTVHSSKPVKKTSRDVNITHPDRVIDKQS
GTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQS
LDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAML
EAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKAIAQFMTEQLPER
FTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWT
VANVLQRLNALKADPWAGYANRQKISKKMWDKLGAHPPE
NT seq 2460 nt NT seq  +upstreamnt  +downstreamnt
atgtccaagcccctgagcgaatacaaccgcaaacgtgatttcgggataaccgccgaaccg
gcaggcagtgcgccagcaggcaaacgcaaagcctcggcgctgtcgtttgtgattcaaaag
catgacgcacgcaacctgcactatgacttccgcctggagctcgacggcgtactgctcagt
tgggccgtccccaaaggcccgagcctggatcccagccacaagcgcctggccgtccacgtc
gaagatcatcccctgagctatggcggctttgaaggcagtattccagcgggtcagtacggc
gcaggcgatgtcatcgtgtgggaccgcggcatctggcagccccacgatgagccacgcaag
gcctacgcagccggcaagctcaaattcaccctggtcggcgagaagctctccggtgactgg
gcgctggtgcgcacgcgcttgaagggcagcggcgacaaggaacaatggctgctgatcaag
gaaaaggacccacaggcgcgctcggccgacgactacgatatcgtccaggcccagcccaac
agcgtgctcagcgatgcctcagtgggcaaacccaagacgcgggccaaggccaggaaaacc
gccctccccgagcaattcaccccacaattggccacactggtggaccgtgcacccgagggc
gattggcaatacgaaatcaagttcgacggctaccgcatgctcgcacgtatccaagcgggt
gaagtgcgcctgttcacccgcaacgggcacgactggaccgagcgtctgccgcgtcaggtc
aaggccttgcaggcactgaagctcaaggacagctggctggatggtgaggtggtcagcctc
aatggcgacggcctgccggactttcaggcgctgcaaaatgccttcgatatcggccgcagc
ctggacattgtctactacttgtttgacgcgccctttctcaatggcgaggaccaacgccag
gcgccggtcgaggaacgccgcgccgccctaaaggaggctctgaccggtagccgcagcaca
ttgctgcgctattccgaagcgtttaccgcgcaccaccgggacatctttgaaagcgcctgc
gacttggccctcgaaggcgtgatcggtaagcgcctgggcagcccgtacgtttcccgtcgc
agtgccgactggatcaaactcaaatgccggctgtcccaggaattcgtgatcgtcggttac
acccggccacagggttcacgcagtggcttcggcgcgctgttgctggcggtgaataacgac
acgggcctggtgtacgcgggccgtgtgggaacgggtttcgatcaggcggcgctgaaagcc
atttacgcgcagctcacaccgctggactgcgagacgtcacccctggcgaagccactgtcc
agcgcccaagcgcgtggtgtgcattgggtcaaaccgacgttggtcgcgcaggtgcagttt
gccgagtggacgcgcgaaggcgtggtccgccaggcagcgtttgtcgggctgcgcaccgac
aagccggtggcgcaggttgttcatgagcaaccacgcacggtccactcaagcaagccggtg
aaaaaaaccagtcgcgatgtgaacatcacccacccagaccgtgtgatcgataaacaaagc
ggcacacaaaaacagcaactcgcgcaattctacgacaccatcagccaatggattttgccc
ttcctgcgccatcgtcctgtctcactgctgagagcgcccgagggtatcgaaggcgagcaa
ttcttccagaaacactcggagcgtctggccattcccaacatcaagcaattggatcagtct
ctcgatcctggccatgcacgcctgatggaaatcgacaacgtcggcgcattgatcggcgca
gtacaaatgggcagcgtggagtttcacacctggggcgccacctcggacaagatcgaaacc
ccggacctgtttgtgctcgatctcgacccggacccggcactgccctggaaagccatgctg
gaggccgcgcaactcaccctgtcggttttggatgagctggggttgcaagccttcgtcaaa
accagcggcggcaagggcctgcacctgatcgtgccgttggcgcgccgagacaattgggag
accgtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcagttgcccgaacgt
tttaccgcgacatcgggccccaaaaaccgggtcggcaagatctttatcgattacctgcgc
aatgcccgcggtgccagcaccgtagcggcgtattccgtgcgcgcacggcctggcttgcca
gtgtcggtaccggtcagccgcgaggagttggaggggttacgcggtgcgcaacaatggacc
gtcgccaatgtgctgcagcgcttgaacgctttgaaagcggacccctgggcggggtatgcc
aatcgccagaagatcagcaagaagatgtgggacaaactgggcgcccatccaccggaatga

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