Pandoraea faecigallinarum: AB870_05915
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Entry
AB870_05915 CDS
T03972
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB870_05915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfg03019
]
AB870_05915
Enzymes [BR:
pfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB870_05915
Messenger RNA biogenesis [BR:
pfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB870_05915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25
P-loop_SecA
AAA_22
CMS1
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AKM29751
UniProt:
A0A0H3WT99
LinkDB
All DBs
Position
complement(3987235..3988704)
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AA seq
489 aa
AA seq
DB search
MADVNAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRLYAKHTPLRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNEIKKLASSYLTSPVTIEVARRNATADTVEQVVYEVDE
DDKRAAVVQILNERDLKQVIVFVNSKIGASRLARQLERDGVVTAAIHGDKSQNERMQALE
AFKQGNIRALVATDVAARGLDISDLPGVINYDLPYNAEDYVHRIGRTGRAGASGVALSLC
APDERKQLVEIEKLIKRELKRGQMTLERRSRSRDERGERGERYERSERHGRHDGLRVGRS
GGAAMPRRVRPEDEFFYKPYEPSPSAGESRHDNRASLDSGAPTAFGVPSEKAPKRQVAAL
LAGFPRKSG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgtaaatgctgttccgacccccggcttcgatagctttgggctgcatgcggac
atcttgcgggccatcgccgagcagggctacacccagccgacgccgattcaggcccaggcc
attccggtggtgctgtccggtcgcgacgtcatgggtgccgcgcaaacggggaccggcaag
accgcgagtttctcgctgccgatcattcagcgcctgttgcccgacgccaacacgagtgca
tcgcccgcccgtcatccggtgcgcgcactgatcctcacgccgacacgcgaactcgccgat
caggtggcagacaacgtgcgcctgtacgcgaagcacacgccgctgcgcaacacggtggtg
ttcggcggcgtcgacatgaatccgcagaaggatgccctgcgacgcggtgtcgaaatcctc
atcgccacgccgggccgtctgctcgatcacgtcgaacagaagacggtgaacctgagccag
gtgaagatgctggtgctcgacgaggccgaccgcatgctggacatgggcttcctgccggat
cttcagcgcattctgaatttgctgccgaagcagcgccagacgctgcttttctcggcaacg
ttctcgaacgaaatcaagaagctcgcatcgagctatctcacgagtccggtcacgatcgaa
gtggcgcgtcgcaatgcgacggccgatacggtcgagcaggtcgtctacgaagtggatgaa
gacgacaagcgcgccgccgtggtgcagattctcaacgagcgcgatctcaagcaggtgatc
gtgttcgtcaacagcaagatcggtgcaagccgtctcgcgcgacaactggagcgcgacggt
gtcgtgacggccgccattcacggcgacaagtcgcaaaacgagcgcatgcaggcgctcgaa
gcgttcaagcaaggcaatatccgcgcgctggtcgcgaccgacgtggcggctcgtggtctc
gacatctccgatctgccgggcgtgatcaattacgatctgccgtacaacgcggaagactat
gtgcaccgtatcggccgtacgggacgcgccggtgcgtcgggtgtcgcgctttcgctgtgc
gccccggacgagcgcaagcaactcgtggaaatcgagaagctcatcaagcgcgaactcaag
cgtggccaaatgacgctggagcgtcgcagccgttcgcgcgacgagcgtggcgagcggggt
gagcgctatgagcgcagcgagcgtcatggccgtcacgacggcttgcgcgtcggtcgcagc
ggcggtgcggccatgccacggcgcgtgcgtccggaggacgagttcttctacaagccttac
gagccgtcgccgtcggccggcgaatcccggcacgacaaccgggcgtcgctcgacagcggt
gcgccgacggcgttcggtgttccgtccgagaaggccccgaaacgtcaggttgccgcgttg
ctcgcgggtttcccgcgcaagtccggctga
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