Pandoraea fibrosis: PI93_007770
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Entry
PI93_007770 CDS
T06385
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI93_007770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfib03019
]
PI93_007770
03009 Ribosome biogenesis [BR:
pfib03009
]
PI93_007770
Enzymes [BR:
pfib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PI93_007770
Messenger RNA biogenesis [BR:
pfib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PI93_007770
Ribosome biogenesis [BR:
pfib03009
]
Prokaryotic type
rRNA processing factors
PI93_007770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QHF12553
LinkDB
All DBs
Position
complement(1739071..1742394)
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAVEGAASNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
SLQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARSLEEDPAGYSKKKEDARPRQEAAVKGITP
EQPAPAAQPRPEPVAVAAPAAAAPARSGGFIGFVKRLLGLEPAAPAPVKVEEPAKPTARP
PRERHDRPHQQNRNRRGNARDENKSGKDNAAQPAREGREGRGARPERAERGERAERNERN
ERGERNERNERQEGRDKRERDDAQRQPAQDVRTEEGREPREGRERGNRRDRNERRERRQP
DGTDGQQAAPQRVAQAAASLTAEHEELEQDRLTAQVEDGATVSAGEEGEQGGEERRRSRR
RGRRGGRREREANEQQQGADGEQAEGAASDDIEGVRAPVLTDEASENAATDALVRAAAPA
VAANVVATPAPAPAAQAEPTSAPVQVPAVQAEAPAPAAPVVTVSEAAPVATPEVPAPVIA
EPVAPVNVAPLPVAEVAAAPVVPPVSAPLPVATPSPAQPSVPAAALTEIAATAAAASAPA
DVSPAPTAPAEVAAPVAPVAPVAPVAPATPIEMVETVKPVQTLAPAAPVQAVPVVPEAAA
AVTEVVTHKPAPVAVAPTLERGALESTLASVGLVWVHTDADKHRAAKEAAAQTAPAPQVR
RERRPSTPINSGPMEQVETRTSSDHVA
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaattgtcgat
gggcagaaactcatcgacatcgatatcgagacggccggccgcgaacagcgtaaaggcaat
atctacaagggtgtcatcacccgtatcgaaccctccctcgaagcttgcttcgtcaactac
ggcgaaggtcgccacggcttcctgccgttcaaggaagtcgcccgcgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctctccgaaggccaggaactcatc
gttcaggtcgaaaaggaagaacgcggcaacaagggcgctgccctcaccacgttcatctcg
ctggccggccgttatctcgtgctgatgccgaacaacccgcgcggcggtggcgtatcgcgc
cgcatcgagggcgaagaccgtcaggaactgcgcgaaacgatggcgcagctcgaactgccg
gaaggcatgagcatcattgcccgcaccgctggcatcggccgctcggcggaagaactgcag
tgggacttgaactatctgctgcaactctggcgcgccgtcgaaggtgccgcctcgaacatc
gaactgccgcgcgactcggcgctgatttatctcgagtcgagcctcgtcatccgtgccatc
cgcgattacttccagcccgacatcggtgaaatcctcatcgacacggaagaaatctccgaa
caggcgcgcaacttcatgcaagtggtcatgcccgaccacctgaaccgcgtgaagcagtat
cgcgacgatgtgccgctgttctcgcgcttccagatcgaacatcagatcgaaacggcgtat
tcgcgtcaggtgccgctgccgtcgggcggcgcgatcgtgatcgatcacaccgaagcgctg
gtctcgatcgacgtcaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgcc
cttcgcaccaacctggaagctgccgacgaagtcgcacgccagttgcgtctgcgcgacctc
ggcggtctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggacgcgctcaaacacgaccgcgcccgcgtccagatgggcaagatc
tcgcgtttcggcctgatggagttgtcgcgtcagcgcctgcgtccgtcgctgtcggaaggc
acgcacgtgacctgcccgcgttgcaacggcaccggccacatccgtgacgccgaatcgtcg
tcgctgcaagtcctgcgcatcatccaggaagaggccatgaaggagcacacggcagcgatc
cactgccaggtgccggtcgaagtctctgctttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcgcgcttcaaggttggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcattacaagctcgagcgcctgcgcttcgacgatccgcgtctggatgcaccgaag
gccagctacgccctcgccgaagaagcggcccgctcgctggaagaagatccggccggctac
agcaagaagaaggaagatgcgcgtccgcgccaggaagccgccgtcaagggcattacgccc
gagcagccggccccggccgcacaaccgcgcccggaacctgtcgctgtcgcagcaccggcc
gccgcagcccccgcacgcagcggtggctttatcggcttcgtgaagcgtctgctgggtctc
gaacccgctgcgccagcaccggtcaaggtcgaagagccggccaagccgactgcacgcccg
ccgcgcgaacgtcatgaccgtccgcatcagcaaaaccgcaatcgccgcggtaatgcccgc
gacgagaacaagtcaggcaaggacaacgccgcacaacccgcacgtgaaggccgcgagggt
cgtggtgcgcgtccggaacgtgcagaacgtggcgaacgcgctgagcgcaacgagcgcaat
gaacgtggcgagcgtaatgagcgcaatgagcgtcaggaaggccgcgacaagcgcgaacgc
gacgacgcgcagcgtcagccggcacaagacgtgcgcaccgaagagggtcgcgagccgcgc
gaaggtcgcgaacgcggtaaccgtcgtgatcgtaacgagcgccgcgaacgtcgtcagccg
gatggcaccgatggccagcaagccgcaccgcaacgcgtggcacaagcggccgcatcgctt
accgcggaacacgaggaactcgagcaggatcgtctgacggcgcaagtcgaggacggggca
acggtatccgcaggcgaagaaggcgagcaaggcggtgaagaacgccgccgcagccgccgt
cgcggtcgtcgtggtggccgtcgcgagcgtgaagccaatgagcagcaacagggtgccgat
ggcgaacaggccgaaggcgcagcgtcggatgacatcgaaggcgtgcgcgctccggtgctg
acggacgaagccagcgaaaacgcggcaaccgacgcactggtccgtgctgccgcgccggcc
gtcgcagcaaatgtcgtggccacgccggccccggcacctgccgcgcaagccgagccgacg
tcggccccggtccaggttcccgccgtgcaagcggaagccccggctcccgccgcaccggtc
gtgaccgtgagcgaagccgccccggtggcaacgccggaagtccccgcccccgtgatcgcc
gagccggtcgccccggtcaacgtggcaccgctgcccgtagcagaagtcgcggctgcaccg
gtggtcccgccggtcagcgcaccgctgccggtggcaacgccgagcccggcacagccctcg
gtgccggccgcagcgctgaccgagattgccgccaccgcagccgcagccagcgccccggca
gacgtcagccccgcgccgacggcgcctgccgaagtcgcagcaccggtcgctccggttgct
ccggtcgctccggttgctccggccacgccgatcgagatggtcgaaacggtgaagcccgtg
caaacgctggcgcccgccgcgccggtgcaagcggtgccggtcgtgccggaagccgcagcg
gctgtcacggaagtcgtgacgcacaagccggccccggtggcggtcgccccgacgctggaa
cgcggcgccctggaatcgacgctggcaagcgtgggtctggtctgggtccacacggatgcc
gacaagcatcgtgccgccaaggaagcggcggcgcaaaccgcaccggcaccgcaagtgcgc
cgcgaacgccgtccgtccacgccgatcaacagcggcccgatggagcaagtggaaacgcgc
acctcgtcggatcacgttgcataa
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