Pseudomonas frederiksbergensis: PFAS1_08580
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Entry
PFAS1_08580 CDS
T04786
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_08580
03009 Ribosome biogenesis [BR:
pfk03009
]
PFAS1_08580
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFAS1_08580
Ribosome biogenesis [BR:
pfk03009
]
Eukaryotic type
Pre-60S particles
RNases
PFAS1_08580
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
APV39394
UniProt:
A0A1H4T7D3
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All DBs
Position
complement(1829574..1830116)
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AA seq
180 aa
AA seq
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MQNPQNLIWIDLEMTGLNPDTDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEILAGMDEW
NTRQHGGSGLTQRVRDSRISMAEAEAETIAFLEKWVPKGKSPICGNSICQDRRFLYTHMK
SLESFFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLALDDIRESIAELQHYRKHFIKF
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccgcagaatctgatctggatcgacctggaaatgaccggtctgaaccctgat
accgacgtcatcatcgagatggccaccatcgtcaccgacagtgacctgaacaccttggcc
gaaggtccggtgatcgccatccaccacagcgacgaaattctcgctggcatggacgagtgg
aatacccgtcaacacggcggctccgggctgacccagcgcgttcgcgacagccgcatcagc
atggccgaagccgaagccgaaaccatcgctttcctggagaaatgggtgccgaagggcaaa
tcaccgatctgtggcaacagcatctgccaggatcgtcgcttcctttatacgcacatgaaa
tccctggaaagcttcttccactaccgcaacctcgacgtgtcgactctgaaagagttggcc
gcacgctgggcgccggacgtgcgcgacagcttcaaaaagggcagcactcacctggccctg
gacgacattcgcgaatcgatcgccgagctgcagcactatcgcaagcatttcatcaagttc
tga
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