Pseudomonas frederiksbergensis: PFAS1_11110
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Entry
PFAS1_11110 CDS
T04786
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_11110
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_11110
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PFAS1_11110
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Topoisomerases
PFAS1_11110
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFAS1_11110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
APV43145
UniProt:
A0A1H4QY17
LinkDB
All DBs
Position
complement(2411890..2414307)
Genome browser
AA seq
805 aa
AA seq
DB search
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESETTGTQIHFKPSDLTFKN
IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNQV
FHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA
EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD
FLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG
RDEYNIAKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK
GKQEQYIKDDDAMEEYMTQSALEDASLHLNEEAPGISGPALERLVNDFRLVMKTLKRLSR
LYPQELTEHFIYLPAVSLEQLSDHAAMQDWMAQYEVRLRTVEKSGLVYKASLREDRERNV
WLPEVELISHGLSNYVTFNRDFFGSNDYKTVVSLGAQLSTLLDDGAYIQRGERKKPVTEF
KEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSQRRMLKVTIEDAIGADQIFNT
LMGDAVEPRRDFIESNALAVSNLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaagaaaatacgtacgactcaacgagcattaaagtgctgaaaggcctggatgcc
gtacgcaaacgtcccggtatgtacattggtgacaccgacgatggcagcggtctgcaccac
atggtcttcgaggtagtcgacaactccatcgatgaagcgctcgctggccactgtgacgac
atcagcatcatcatccacccggacgaatccatcaccgttcgcgacaacggtcgtggtatc
ccggtagacgtgcacaaagaagaaggcgtctcggcagccgaggtcatcatgaccgtgctg
cacgccggcggtaaatttgacgacaactcctacaaagtatccggcggtctgcacggtgta
ggcgtctcggttgtgaacgccctgtccgaagaactggtcttgaccgttcgccgcagcggc
aaaatctgggaacagacctacattcacggtgttccaaaagagccgatgaaaatcgtcggc
gagagtgaaaccaccggcacccagatccacttcaaaccgtccgacctgaccttcaagaac
atccacttcagttgggacatcctggccaagcggattcgtgaactgtccttcctcaactcc
ggtgtcggcatcgtcctcaaggatgagcgcagtggcaaggaagagctgttcaagtacgag
ggcggcctgcgtgcgttcgttgaatacctgaacaccaacaagaccccggtcaaccaggtg
ttccacttcaacatccagcgcgaagacggcatcggcgtggaaatcgccttgcagtggaac
gacagcttcaacgagaacctgttgtgcttcaccaacaacattccacagcgcgatggcggt
actcacctggtgggtttccgttccgcgctgacgcgtaacctgaacacctacatcgaagct
gaaggtctggcgaagaagcacaaagtcgcgaccaccggtgacgatgcccgtgaaggcctg
accgcgatcatctcggtgaaagtgccggatccgaagttcagctcccagaccaaagacaag
ctggtttcttccgaagtgaagaccgcggtcgaacaggaaatgggcaagtacttctccgac
ttcctgctggaaaacccgaacgaagccaagcttgtcgtcggcaagatgatcgacgcggct
cgcgctcgtgaagcggcgcgtaaagcccgtgagatgactcgtcgtaaaggcgcgctggat
atcgccggcctgcctggcaaactggctgactgccaggaaaaagaccctgccctttccgaa
ctgtacctcgtggaaggtgactctgctggcggctccgccaagcagggacgcaaccgtcgg
acccaggccatcctgcctctcaagggcaagatcctgaacgtcgagaaggcgcgcttcgac
aagatgatctcttcgcaggaagtgggcaccttgatcaccgcgctgggctgtggcattggc
cgcgatgagtacaacatcgcgaagctgcgttatcacaacatcatcatcatgaccgatgct
gacgtcgacggttcgcacatccgtaccctgctgctgaccttcttcttccgtcagttgccg
gagctgatcgagcgcggctacatctacatcgcccagccaccgctgtacaaggtcaagaaa
ggcaagcaagagcaatacatcaaagacgacgacgccatggaagagtacatgacgcagtcg
gccctggaagatgcgagcctgcacctgaacgaggaagcaccgggcatttccggaccggcc
ctcgagcgtctggtgaatgacttccgtctggtaatgaagacgctcaagcgtctgtcgcgc
ctgtatccacaggagctgaccgagcacttcatctacctgcctgccgtcagcctggagcaa
ctctccgatcacgcagcgatgcaggattggatggcccagtacgaagtgcgcctgcgcacc
gtcgagaagtccggcctggtttacaaagccagcctgcgtgaagaccgtgaacgtaacgtc
tggttgcctgaggtcgaactgatctcccatggcctgtcgaactacgtcaccttcaaccgc
gacttcttcggcagcaacgattacaagactgttgtttctctgggcgctcagctgagcacc
ttgctggacgacggcgcgtatatccagcgtggcgagcgcaagaagccggtcaccgagttc
aaggaagcccttgaatggctgatggccgaaagcaccaagcgtcacaccatccagcgatac
aaaggtctgggtgagatgaacccggatcagctgtgggaaaccaccatggacccaagtcag
cgccggatgctcaaagtgaccatcgaagacgccattggcgcggaccagatcttcaacacc
ctgatgggtgatgcggtcgagcctcgtcgtgacttcatcgaaagcaacgccctggcggtt
tccaacctggacttctga
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