Pseudomonas frederiksbergensis: PFAS1_21190
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Entry
PFAS1_21190 CDS
T04786
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PFAS1_21190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_21190
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PFAS1_21190
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PFAS1_21190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
APV41746
UniProt:
A0A1P8EZV5
LinkDB
All DBs
Position
4570525..4571319
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AA seq
264 aa
AA seq
DB search
MKNLKIATFNVNGMRARLPNLLAWLEREQPDIACLQELKSVDSAFPVAELEAAGYGALWQ
GQSSWNGVAILARDAQPLERRRGLPGDDSDTHSRYLEAAVHGILVGCLYLPNGNPQPGPK
FDYKLAWFERLIHYAQTLQASEHPVVLAGDYNVVPTDLDIYNPRSWLKDALLQPESRECY
QRLLAQGWTDSLRHLYPQDRLYTFWDYFRQHWQKNSGLRIDHLLLNPVLSPYLQEGGVDA
WVRNEPHASDHAPAWIRLSPRKRR
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacctgaaaatcgcgacattcaacgtcaacggcatgcgcgcccgactgccgaac
ttgctggcctggcttgagcgagagcaaccagacatcgcctgtttgcaggagctcaagtca
gtcgacagtgcatttcccgtcgccgagcttgaggccgcgggttatggcgcgctctggcaa
ggacagtcgtcgtggaacggcgtggcaattctggcgcgggacgcgcagccgctggagaga
cgtcgaggcctgccaggcgatgacagcgacacccatagccggtatctggaggccgccgtg
cacgggattctggtgggctgtctgtacctgcccaacggcaatccgcagccggggccgaag
ttcgattacaagctggcgtggttcgaacggctgatccactacgcgcagacgcttcaggcc
agcgagcatcctgtggtcctggccggtgactacaacgtggtgcccaccgacctcgacatt
tacaacccgcgatcctggctgaaggatgcgttgctgcaacctgaaagccgcgagtgttat
cagcgcctgctggcccagggctggaccgattccttgcgccatctgtatccgcaggatcgg
ctctataccttctgggattattttcgccagcactggcaaaaaaactcggggctgcgcatc
gatcatctgttgcttaatccggtgctgagcccttatttgcaggagggcggagtggatgcc
tgggttcgcaacgagccccacgcgagtgatcacgcgccggcgtggattcgattgagtccg
cgtaagcggcgttga
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