Pseudomonas protegens Pf-5: PFL_3415
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Entry
PFL_3415 CDS
T00249
Name
(GenBank) putative DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_3415
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_3415
Enzymes [BR:
pfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFL_3415
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Topoisomerases
PFL_3415
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFL_3415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AAY92684
UniProt:
Q4KB63
LinkDB
All DBs
Position
3933614..3934651
Genome browser
AA seq
345 aa
AA seq
DB search
MPDACDTPDLPADLHYTDDRQPGIRRRKLRGKFVYYDAQGQRLTQAAEVQRINALAIPPA
YAEVWICPDPKGHLQATGRDARGRKQYRYHPRWREVRDGDKYARLLAFGNALPKLRRQLQ
AQLAVPGFSREKVMATLILLLDETLIRVGNSQYARDNRSYGLTTLRNRHVQVSGSAIHFQ
FRGKSGVEHQITVKDPRLARVVKRCLELPGQQLFQYLDEDGQRHHVSSSDINACLQQLTG
ADFTAKDYRTWAGSVLALERLRQQPWEPQAEAKRHIVATVKEVARELGNTPAVCRKCYIH
PALLERFVLGELAQLPKARARQGLKAEEAGLANFLRRLAKEAQPG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgcttgcgatacccccgacctgcccgccgacctgcactacaccgacgaccgc
cagccgggcatccggcggcgcaagctgcggggcaagttcgtctactacgacgcccagggc
cagcgccttacccaggccgccgaggtacagcggatcaacgccctggcgattcccccggcc
tacgcagaggtgtggatctgccccgaccccaagggccatctgcaggccaccggccgcgac
gcaaggggccgcaagcagtaccgctaccacccgcgttggcgcgaagtgcgcgacggtgac
aagtacgctcgcctgctggcgttcggcaacgccttgcccaagctgcgccggcagttgcag
gcgcaattggcggtgccaggcttcagccgggaaaaggtcatggccaccttgatcctgctg
ctggatgaaaccctgatccgcgtcggcaacagccagtatgcccgggacaatcgctcctac
ggcctgaccacgttgcgcaaccgccatgtacaggtcagcggcagcgccatccacttccag
ttccgtggcaagagcggggtcgagcaccagatcaccgtcaaggacccgcgcctggcacgg
gtggtcaagcgctgcctggagttgcctgggcagcagctgttccagtacctggacgaagac
ggtcaacggcaccacgtcagctcgtcggacatcaacgcctgcctgcagcaactgaccgga
gccgacttcaccgccaaggactaccgcacctgggccggcagcgtcctggccctggagcgg
ttgcgccagcagccttgggagccccaggccgaggcgaagagacacatagtggcaacggtc
aaggaagtggcccgggaactgggtaacactccggcggtatgccgcaagtgctacatccat
ccggcgctgctggagcgcttcgtcctcggtgagttggcgcagctgcccaaggcccgggcc
cgccagggcctgaaggccgaggaagcgggcctggcgaactttctgcggcgcctggcaaag
gaggcccaaccgggctga
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