Propionibacterium freudenreichii subsp. freudenreichii DSM 20271: RM25_0520
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Entry
RM25_0520 CDS
T03860
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfre
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Pathway
pfre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RM25_0520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfre03021
]
RM25_0520
03400 DNA repair and recombination proteins [BR:
pfre03400
]
RM25_0520
Enzymes [BR:
pfre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RM25_0520
Transcription machinery [BR:
pfre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RM25_0520
DNA repair and recombination proteins [BR:
pfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RM25_0520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AJQ90247
LinkDB
All DBs
Position
624766..628242
Genome browser
AA seq
1158 aa
AA seq
DB search
MAASRTALNNSDVVSTTGRISFAKIREPLGIPNLLDLQVKSFNWLVGNENWQNEVDQALS
EGRTDVNTKSGLEEIFEEISPIEDFSQTMSLSFRDHRFEEPKYTIEECKDRDATYAAPLF
VTAEFMNNDTGEIKSQTVFIGDFPLMTDKGTFIITGTERVVVSQLVRSPGVYFEQTPDKT
SDKDIFTCKVIPSRGAWLEFEIDKRDTVGVRLDRKRKQNVTVLLKALGWTEERILEEFGE
YESIRMTMEKDHVTTQDEALLDIYRKLRPGEPPARDAAQTLLDNFYFNPKRYDTAKVGRY
KINKKLGLSLPYDQQVLTMDDIVAAIHYICALHEGKTELADGLPVEPDDIDHFGNRRVRT
VGELIQNQLRTGLGRMERVVRDRMTTQDIEAITPQTLINVRPVTAALKEFFGTSQLSQFM
DQNNPLAELTHKRRLSAVGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSL
ASFARVNAFGFIETPYRKVDKGLVTDHIDYLTADEEDRFVIAQANATMNDKGELTEDRVL
VRVSHGDVDLVPADEVDYIDVSARQMVSVGSALIPFLEHDDSSRALMGANMQRQAVPLVR
NESPYVGTGMEYRAAVDVGEVTLASKPGTVTGVTGDLIDIACDDGTYQTFKLEKFQRSNA
GTCVNQRPIVTPGQHVEAGTPLADGPCTDQGELALGRNLLCAFMPWRGLNYEDAIIISQR
VVSEDILTSIHIEEYEVDARDTKLGPEEITHDIPNVSDDMIASLDDRGIVRIGAEVRPGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGEEGTVIGVRIFDREENDE
LPPGVNQMVRVYVAQKRKVQVGDKLAGRHGNKGVISRILPIEDMPFMADGTPVDIMLNPL
GVPSRMNLGQVLEMHLGWIAHSGWDLGDATDPWAEHLREVGLEHVDGDVRLATPVFDGAE
EHEITGLLAHGLPNRDGDHIVDSDGKTTLFDGRTGEEFPEEVGVGYMYMLKLHHLVDDKI
HARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAWALQEMLTIKSDDVAGRVK
VYEAIVKGENIPEPGIPEGFKVLVQEMKSLCLNVEVLGSDGAVIDLRETEDDYRTVDELG
IDLSRRPGTDSYKLESEG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcactgcgttgaacaactccgatgtcgtctccaccacagggcggatc
tcgttcgcgaagatccgtgaacctctgggaatccccaacctgctggatctgcaggtgaaa
tcgttcaactggctcgtcggcaacgagaactggcagaacgaggtggatcaggccctctcg
gagggtcgcaccgacgtcaacaccaagtccggactggaggagatcttcgaggagatctcc
ccgatcgaggacttctcccagacgatgtccctgagcttcagggaccaccgcttcgaggaa
cccaagtacaccattgaggagtgcaaggatcgcgacgcgacctatgccgctccgctgttc
gtcaccgccgagttcatgaacaatgacaccggcgagatcaagagccagaccgtgttcatc
ggcgatttcccgctgatgaccgacaagggcaccttcatcatcaccggcaccgagcgcgtc
gtcgtctcgcagctggtgcgttcgccgggcgtctacttcgagcagacccccgacaagacc
agcgacaaggacatcttcacctgcaaggtgatccccagccgcggtgcctggctcgagttc
gagatcgacaagcgcgacaccgtgggcgtgcgcctcgaccgcaagcgcaagcagaatgtc
accgtgctgctcaaggcactcggctggaccgaggagcgcatcctcgaggagttcggcgag
tacgagtcgatccgcatgaccatggagaaggaccacgtcaccacccaggacgaggccctg
ctcgacatctaccgcaagctgcgtccgggcgagcccccggcgcgcgatgctgcccagacg
ctgctggacaacttctacttcaacccgaagcgctatgacaccgccaaggttggccgctac
aagatcaacaagaagctcggcctgagcctgccctacgaccagcaggtgctcacgatggac
gacatcgtggccgcgatccactacatctgtgcgctgcacgagggcaagaccgagctggct
gatggcctgcccgtcgagcccgatgacatcgaccacttcggcaatcgccgggtgcgcacg
gtgggcgagctgatccagaaccagctgcgtaccggcctgggccgcatggagcgcgtcgtg
cgtgatcgcatgaccacccaggacatcgaggccatcacgccccagaccctgatcaatgtg
cgtccggtcaccgcggcgctcaaggagttcttcggcaccagccagctctcgcagttcatg
gaccagaacaacccgctcgccgagctgacgcacaagcgtcgcctctcggccgtgggcccc
ggtggcctgtcgcgcgaccgcgccggcatggaagtgcgagatgtgcaccccagccactac
ggccgcatgtgccccatcgagacccctgagggcccgaacatcggcctgatcggttcgctg
gcatccttcgccagggtcaatgccttcggtttcatcgagaccccttaccgcaaggtggac
aagggcttggtcaccgaccacatcgactacctgaccgccgatgaggaggaccgcttcgtc
atcgcccaggccaacgccacgatgaacgacaagggcgagctcaccgaggatcgcgtgctg
gtgcgcgtgagccacggtgacgtcgacctggtgcccgccgacgaggtggactacatcgac
gtctcggcccgccagatggtgtcggtcggttcggccctcatcccgttcctcgagcacgat
gactcctcgcgagccctgatgggtgcgaacatgcagcgccaggccgttccgctggtgcgc
aatgagtcgccctatgtcggcaccggcatggagtaccgcgccgctgtcgacgtcggcgag
gtgacgcttgcgtccaagcccggcaccgtcaccggtgtcaccggcgacctcatcgacatc
gcctgcgatgacggcacgtaccagacgttcaagctggagaagttccagcgttcgaacgcc
ggcacctgcgtcaaccagcgcccgatcgtcacccccggacagcacgtcgaggccggcacc
ccgctggccgacggcccctgcaccgaccagggcgagctggccctgggccgcaacctgctg
tgcgcgttcatgccctggcgtggcctgaactacgaggacgcgatcatcatctcccagcgc
gtcgtgagcgaggacatcctcacctcgatccacatcgaggagtacgaggtcgatgcccgc
gacaccaagctggggcctgaggagatcacccacgacatcccgaacgtctccgacgacatg
atcgccagccttgacgatcgtggcatcgtgcgcatcggcgccgaggtccgccccggcgac
atcctggtcggcaaggtcacgcccaagggcgagaccgagctcacccctgaggagcgactg
ctgcgcgcgatcttcggcgagaaggcccgcgaggtgcgcgacacgtccatgaaggttccg
cacggcgaggagggcaccgtcattggcgtgcgcatcttcgatcgtgaggagaacgacgag
cttcctcccggcgtcaaccagatggtgcgcgtctacgttgcgcagaagcgcaaggtgcag
gtgggcgacaagctcgccggtcgccacggcaacaagggcgtcatctcccggatcctgccg
atcgaggacatgccgttcatggccgatggcactccggtggacatcatgctgaacccgctg
ggcgtgccctcgcgcatgaacctgggccaggtgctcgagatgcacctcgggtggattgcc
cactcgggttgggatctcggcgacgccaccgatccgtgggccgagcacctgcgtgaggtc
gggctggagcacgtggacggcgacgtccgcctggccaccccggtcttcgacggcgccgag
gagcacgagatcaccggcctgctggcgcatggcctgcccaaccgcgacggcgatcacatc
gtcgacagcgacggcaagaccacgctgttcgacggccgcaccggcgaggagttccccgag
gaggtgggcgttggctatatgtacatgctgaagctccaccacctcgtcgacgacaagatc
cacgcccgttccaccggtccgtactcgatgatcacccagcagcccctgggcggtaaggcc
cagttcggcggccagcgcttcggcgagatggaggtgtgggcactcgaggcctatggcgca
gcctgggccctgcaggagatgctcaccatcaagtccgatgacgtggccggccgagtgaag
gtctacgaggccatcgtcaagggcgagaacatccccgagcccggcattcccgagggcttc
aaggtgctcgtccaggagatgaagtcgttgtgcctgaacgttgaggtgctcggctccgat
ggggcagtgattgatctgcgcgagaccgaggatgactaccgcacggtcgacgagttgggc
attgacctgtcccgtcgtcccggaactgattcgtacaagttggagtccgagggctga
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