Pseudomonas fluorescens SBW25: PFLU_0530
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Entry
PFLU_0530 CDS
T00899
Symbol
rnr
Name
(GenBank) Ribonuclease R (RNase R) (EC
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_0530 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_0530 (rnr)
03016 Transfer RNA biogenesis [BR:
pfs03016
]
PFLU_0530 (rnr)
Enzymes [BR:
pfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PFLU_0530 (rnr)
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFLU_0530 (rnr)
Transfer RNA biogenesis [BR:
pfs03016
]
Prokaryotic type
tRNA degradation factors
PFLU_0530 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
CAI2794847
UniProt:
C3KE65
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All DBs
Position
1:601929..604565
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AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILEQPKTSEAKALRGEYGHVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVQRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMPDKPAEAPNSRKKRGSEPAAPASKGKGAPAKAA
AAEPAPAKAGRRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGK
SREAEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcacctcgccgatcggggttcgcctgctagc
cgcgagcagctggttgaagagttcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgtttgcgtgccatggagcgcgatgctcaattgatctatacccgccgtggtacttac
gcgccggtggataagctcgacctgatcctgggccgcattgccggccatcgtgacggcttc
ggcttcctgatcccggacgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgtgccctggcgcgcgtgtcgggcctggaccgtcgcggtcgt
cgcgaaggtgtgatcgtcgaagtggtgtcccgtgcccacgagtccatcgtcggccgttac
ttcgaagaaggcggcatcggctttgtggtgccggataacccgaaggtccagcaggaagtg
ctgattaccccgggccgcaatggcgccgccaaggtcggccagttcgtcgaggtgaaaatc
acccactggccaacggcacgcttccagcctcaaggcgatatcgttgaagtggtcggcaac
tacatggcgccgggcatggaaatcgacgtcgcgctgcgcacctatgatattcctcacgtc
tggcctgaagctgtgctgaaagaagccgccaagctcaagccggaagttgaagagaaagac
aaagaaaaacgcatcgacctgcgtcatctgccgttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
gggggctggaagttgttcgtcgcgattgcggacgtgtccagctacgtgaaaatcggttcg
gccctggacaacgaggctcaggtgcgcggcaactccgtgtatttccctgagcgcgtgatc
ccgatgctgcctgagcagctgtccaacggcctgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctcgaaaaccggcgaaatgaccgattaccagttc
tacgaagcggtgatccattcccaggcgcgcctgacctacaacaaggtcagcaccatcctg
gaacagccaaaaaccagcgaagccaaagcgctgcgtggcgagtacgggcatgtcgtgccg
cacctcaagcagctttacgctttgtacaaagtgttgttgggcgcacgtcatgtgcggggt
gcgatcgattttgaaacccaggaaacccggattgtcttcggttccgagcgcaaaatcgcc
gccatcaccccgaccacgcgcaacgacgcacacaaactgatcgaggaatgcatgctggcg
gccaacgtggccaccgctgaattcctgaagaagcacgagatccctgcgttgtaccgtgta
cacgacggtccgccgccggagcgtctggaaaaactgcgcgcgttcctcggtgagctcggt
ctgtccctgcacaaaggcaaggacggcccgacgcccaaggattaccaggcattgctggcg
agcatcaaggaccgtccggattatcatgtgatccagaccgtcatgctgcgctccctgagc
caggcggtgtacagcgccgacaaccagggccacttcggcctgaattacgaggcgtacacc
cacttcacctcgccgattcgccgttacccggatctgctcacgcaccgcgcgatccgcagc
gtgatccactccaagcagaacacgccgcacgtccagcgcgccggtgccatgaccattccg
aaggcacggatctatccgtacgacgaagcggccctggaacagttgggcgagcagtgctcc
atgagcgagcgccgcgccgatgaagccacccgtgacgtcgtgaactggctcaagtgcgag
ttcatgaaagaccgcgtgggcgagtcgttcccaggtgtgatcaccgccgtgaccggcttt
ggcctgttcgtcgagctgaccgatatctacgtcgagggtctggtgcatgtcaccgccttg
ccgggcgactactaccacttcgaccctgtgcatcaccgcttggcgggcgagcgcaccggt
cgcagcttccgcttgggcgacacggttgaagtgcaggtgatgcgcgtcgacctcgacgag
cgcaagatcgatttcggcatgcctgacaaacccgccgaagcgccgaacagccgtaaaaag
cgtggcagcgaacctgctgcgccagccagcaaaggcaagggcgctcctgcgaaagcagcg
gctgccgagcctgcgccggccaaggccggtcgtcgttcttctgccaaggacaaggccccc
gaagcctaccgcccaagcgacgcagcggcgaagaacgccgaactgcgcaagagccgtgag
ttgaagcagcagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaag
tcccgcgaggcggaaaaaccgtcgagcaagccaagtaaacaccgtaaaggcccgcccaag
gcgggttcggctcccgcgaaaagcggcgggtcgcgcaaacctaaggccaagtcatga
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