Pseudomonas fluorescens SBW25: PFLU_1565
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Entry
PFLU_1565 CDS
T00899
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor (TRCF) (EC
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFLU_1565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_1565 (mfd)
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFLU_1565 (mfd)
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFLU_1565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAI2795851
UniProt:
C3K4V8
LinkDB
All DBs
Position
1:complement(1715359..1718808)
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AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIRLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcattgccagcctgtaccgcctgccggaa
ctggcccacggcgtgctggtggtgccgatcaccaccgcgttgcatcgcctggcgccgacc
aagttcctgctgggcagcagcctggtcctggatatcggccagaagctcgacgtcgagcag
atgcgcacgcgcctggaagccagcggctaccgctgcgtcgacactgtgtacgaacacggt
gagttcgcagtgcgcggggccctgatcgacctgttcccgatgggcagcaaactgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccagaaaaccag
cgatccatcgacaaagtcgactcgatcaagctgctgcctgcgcgggaatttccattacag
aaagatgcggtcacgcgcttcaaggcgcgcttccgtgagcgcttcgacgtcgacttccgt
cgctgtccgatcttccaggacttgagcagtgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccaccctgttcgactacctgccacaggacacccaa
gtgttctcgctgccgggtatcgagcaagcagcggaaaacttctggaacgacgtgcgtaac
cgttacgaagaacgccgcgtcgatccatcccgtccattattaccgcccgccgagttgttc
ctgccggtggaggactgctttgcccgtcttaaaaactggccccgcgtggtcgccagccaa
caggatgtggacgccggcagcggccgcgagcgcttcccagcgggcacactgccggacctg
gcaatccaggccaaagccacgcaaccgctggaagcgctgtccaacttcctcggcgacttc
cctggccgcgtgctgtttaccgccgagtccgccgggcgccgcgaagtgctgctggagctg
ctcgaacgcctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgtcaagagc
aaagaacgcttggcgatcaccatcgcgccactggatgaaggcctgctgctggacgacccg
gcgctggcgctgatcgccgagagcccgctgttcgggcagcgcgtgatgcaacgccgtcgc
cgcgaaaaacgcgccgacgccaacaacgacgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggacgctacctgggcctgcagacc
ctggagatcgataaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccagcctgcacctgatcgcccgttacaccggcagcgacgatgcc
ctggcaccgttgcaccgcctgggctccgagacttggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgacgttgccgccgaattgctcgacatctatgcacgccgcgccgcgcgc
gaaggttatgcgttcgccgacccgaaagccgactacgcgaccttcagcgccggtttcgcc
ttcgaagaaactcccgaccagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtatgcggcgacgtcggcttcggcaagaccgaagtggcg
atgcgtgcggctttcattgcagtgcatggcggcaagcaagtggcgatcctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgcagccatcgccgat
ttggccgaaggcaagatcgacatcgtgatcggcacgcacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgttttggcgtgcgccag
aaggaacaactcaaggccctgcgcagcgaggtcgacattctgaccctcactgccacaccg
attccgcgcacactgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcgtcgcttgtcggtgcgcaccttcgtgatggagcaaaacaaaagcacggtg
aaagaagcgctgctgcgagaactgctgcgcggcgggcaggtgtactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgacctcgccgaactggtaccggaagcgcgcatt
gccatcggccacggacagatgcgcgagcgcgatctcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagtttggcctggcgcagctgcaccag
ttgcgcggccgggtcgggcgcagtcaccaccaggcgtatgcgtatttgctcacgccaccg
cgccagcagatcacttccgacgcggaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgccggttttgtgctggccaccaacgacctggaaatccgtggtgccggcgaactg
ctgggcgacggccagagcgggcagatccaggcggtcggtttcaccctgtatatggaaatg
cttgaacgcgcggtgaaagcgatccgcaagggcgagcaaccgaatcttgatcaaccgctg
ggcggcggtccggaaatcaacctgcgcttgccggcgctgatccccgaagactacctgccg
gacgtgcatgcgcggctgatcctgtacaaacgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcctgaccctgctcaaattgcaggctgagcaattggggatcaagaaggtc
gatgccgggccgcagggtgggcgcatcgagttcgaagcgcagacgccggtggacccgttg
gtgctgatcaggctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtaccgatggaacgtgccgaagaacgctttaatacattggaggcgttg
ttcgaacgcctcatcccgaaatctgcttga
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integrated database retrieval system
