KEGG   Pseudomonas fluorescens SBW25: PFLU_2911Help
Entry
PFLU_2911         CDS       T00899                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfs  Pseudomonas fluorescens SBW25
Pathway
pfs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PFLU_2911
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfs03400]
    PFLU_2911
Enzymes [BR:pfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFLU_2911
DNA repair and recombination proteins [BR:pfs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PFLU_2911
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CAY49138
UniProt: C3KAZ9
LinkDB All DBs
Position
complement(3172262..3174778)
Genome map
AA seq 838 aa AA seqDB search
MPKPLSEYNRKRDFGVTGEPAGRAPAGKRNASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRK
AYAAGKLTFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDAQARPADDYDIVQAQPD
SVVSDASAGKSNVKYNVKYNVKYNAKPSTKATRQQAAATALPEQFNPQLATLVDRAPEGD
WQYEIKFDGYRMLTRIRDGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLN
GDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGQDQRQAPVEARRAALKDALAVSRSKL
LRFSEAFTAHPRDIFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYT
RPQGSRSGFGALLLAVNDDAGLVYAGRVGTGFDHASLKAIYAQLKPLERKTSPLEKPLSS
AQARGVHWVEPTLVGEVQFAEWTREGVVRQAAFVGLRSDKPAAEIIHELPRTANAMKPAK
KTSAAVTITHPDRVIDPQSGTRKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEPF
FQKHSERLAIPNIKHLDQALDPGHARLMEIDSTRALIGAVQMGAVEFHTWGATSDKIETP
DLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDGWDT
VKAFAKAIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPV
SVPISREELKGLRSAQQWTVANVQQRLNGLKADPWAGYTNRQKLSQKMWDKLGARPPV
NT seq 2517 nt NT seq  +upstreamnt  +downstreamnt
atgccaaagcccctcagcgagtacaaccgtaagcgcgacttcggcgttaccggcgaaccg
gcaggccgtgcacctgccggcaaacgcaacgcgtcggcgctgtcttttgtgatccagaaa
catgacgcgcgcaacctgcactatgactttcgcctggaactcgacggcgtgctgctcagt
tgggcggtgcccaagggcccgagcctggacccgagccaaaagcgcctggccgtccacgtg
gaagatcaccccctcagctatggcagcttcgaaggcagtattcccgccggccaatacggc
gctggcgacgtcatcgtgtgggatcgcggcatctggcaaccccatgatgacccgcgtaag
gcctacgccgccggcaagctcacattcaccctggtcggcgagaaactctccggcgactgg
gcgctggtgcgcacccgcctgaagggcagcggcgacaaggaacaatggctgttgatcaag
gaaaaggacgcgcaggcgcgcccggcagacgactacgacatcgttcaggctcaaccggac
agcgtggtcagcgacgcctcggcaggtaaatccaacgttaaatacaacgttaaatacaac
gttaaatacaacgccaagcccagcaccaaagctacgcgacaacaagcagcggcaaccgcc
ctccccgaacaattcaacccacaattggccacgctggtggaccgcgcccccgaaggcgac
tggcagtacgaaatcaagttcgacggttaccgcatgctcacgcgcattcgtgacggcgag
gtgcgcctgttcacccgcaacggccatgactggaccgaacgcctgccgcgccaggtcaag
gccctgcaggccctcaagctcaaggacagctggctcgacggcgaggtggtcagcctgaac
ggcgacggcctgccggacttccaggcactgcaaaacgccttcgatatcggccgcagcctg
gacattgtctactacctgttcgatgcgccattcctcaacggccaggatcaacgccaagcg
cctgtcgaggcacgccgcgccgcgctcaaggacgcgctggccgtaagcagaagcaagttg
ctgcggttctccgaagccttcaccgcccaccctcgcgatatcttcgaaagtgcctgtgac
ctcgccctggaaggcgtgatcggtaagcgcctgggcagcccctatgtgtcgagtcgcagt
gccgattggatcaagctcaaatgccgcctgcgccaggagttcgtgatcgtcggctacacc
cggccacagggttcacgcagtggtttcggcgcgctgttgctggcggtgaatgacgatgcc
gggctggtgtatgccgggcgtgtgggcacaggctttgatcacgcgtcactgaaagcgatt
tacgcgcaactcaagcccctggaacgcaagacatcgccgctggaaaagccgctgagcagc
gcccaggcccgtggcgtgcactgggtggagccgacgttggttggcgaggtgcaattcgcc
gaatggacccgggaaggtgtggtccgccaggcggcattcgtggggctgcgcagcgacaaa
ccggccgccgagatcattcacgagctaccacgaacggccaacgccatgaaacccgcgaaa
aaaaccagcgctgcggtaacgatcacccaccccgaccgggtgatcgacccgcaaagcggc
acccggaagcagcaactggcacagttctacgacagcatcagccagtggatcctgcccttc
ctgcgccaccgccctgtttcattgctgcgagcgcctgaaggcatcgaaggcgagccattc
ttccagaaacattcagagcgcctagccattcccaacatcaagcacctggatcaggcactc
gacccagggcatgcgcgcctgatggaaatcgacagcacccgcgcgttgatcggtgccgta
caaatgggtgccgtagaatttcacacctggggcgccacctcagacaagatcgaaaccccc
gacctgtttgtgctcgatctcgacccggacccggcgctgccctggaaagccatgctggaa
gcggcgcaactgaccctgtcggtgctggatgaactggggctgcaagcgttcgtcaagacc
agcggaggcaagggactgcacctggtcgtgccactggcgcgccgcgacggttgggacacc
gtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcaactgcccgagcgtttt
accgcgacgtcagggcccaaaaaccgcgtcggcaagatctttatcgactacctgcgcaac
gcgcggggcgccagcaccgtggcggcctactccgtgcgggcacgccctggcctgccggtg
tcggtgccgatcagccgtgaggagttgaagggtttacgcagcgcgcagcaatggactgtc
gccaatgtgcagcagcggttgaacggtttgaaggctgatccctgggccgggtataccaac
cgacagaaactcagccagaagatgtgggacaaattgggcgcccgtccaccggtgtga

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