Pseudomonas fulva: Psefu_0340
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Entry
Psefu_0340 CDS
T01501
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03030
DNA replication
pfv03410
Base excision repair
pfv03420
Nucleotide excision repair
pfv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psefu_0340
03410 Base excision repair
Psefu_0340
03420 Nucleotide excision repair
Psefu_0340
03430 Mismatch repair
Psefu_0340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfv03032
]
Psefu_0340
03400 DNA repair and recombination proteins [BR:
pfv03400
]
Psefu_0340
Enzymes [BR:
pfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Psefu_0340
DNA replication proteins [BR:
pfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Psefu_0340
DNA repair and recombination proteins [BR:
pfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Psefu_0340
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psefu_0340
MMR (mismatch excision repair)
DNA ligase
Psefu_0340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psefu_0340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
HHH_5
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AEF20324
UniProt:
F6AFY6
LinkDB
All DBs
Position
complement(382972..384648)
Genome browser
AA seq
558 aa
AA seq
DB search
MNAWIAACIFLLLPATALTDACPPQTPAHDRQVAELAAQVARWDDAYHRQGHSLISDELY
DQARAHLEHWQHCSNNAVTTSPLSGAGGPVQHPVAQTGLRKLPDERAVAQWMASRDDLWI
QPKVDGVAITLRYEGGQLRQVVSRGDGNSGQDWTHQAAQIASIPKQLSERGELILQGELY
LKRPGHVQASEGSAAARSTVAGLMARQQLQQDQAASIGLFVWDWPNGPTDMQQRLEGLGR
MGFADSRAYSQPIGTLTEAQRWREHWFRNPLPFATDGVVLRQGQRPSSERWRAEPPHWAA
AWKYPASEALALVEAVDFSIGRTGRITPLLRLQPVKLDDRTIRVVSAGSLERWRQLDIRP
GDQVAIRLAGQTIPKLEGVVLQSAERAALEIPHEDDYHALSCLRASSACISQFHARLTWL
SGKQALNLSGIGAGTWQKLLAAQHLEGLLDWLHLDEVQLLAVPGIGPQGATALNQRFAEA
RQRPFHDWLRALGAPVNPDNLRAESWMEMQQRSASDWQTLPGIGPTRAAQLQAFFQHEEM
LALADQLGRAGVAGFQLR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcctggatcgctgcctgcattttcctattacttcccgccaccgccctcaccgac
gcctgcccgccacagacaccggctcatgaccgccaggtagccgaactcgccgcccaggtc
gcgcgctgggacgatgcctatcaccgccagggccactcgctgatcagcgacgagctctac
gaccaggcccgcgcccacctcgaacattggcagcactgcagcaacaacgccgttaccacc
agtcccctgagcggtgccggaggccccgtgcagcatccggtggcgcagaccggattgcgc
aagctgccggacgagcgcgccgtcgcccaatggatggccagccgcgacgacctgtggatc
cagcccaaggtcgacggcgtggcaatcaccctgcgctatgaaggcggccagctgcggcag
gtggtcagccgtggcgacggcaatagcggccaggactggacgcaccaggctgctcagatc
gcgtccatccccaagcaactgagcgaacgtggcgagttgattctgcagggcgagctgtac
ctcaagcgccccggtcatgtgcaggccagcgaaggcagcgccgccgcgcgcagcaccgtg
gcgggcctgatggcccgtcagcaattgcagcaggaccaagcggccagcatcggactgttc
gtctgggactggcctaatggcccgaccgatatgcaacagcgcctggaaggcctgggacgg
atgggtttcgcggatagccgtgcttacagtcagccgattggtactctcaccgaagcccag
cgctggcgcgaacactggtttcgcaatccactgcccttcgcaacagacggcgtggtgctg
cgccaagggcagcggccgagcagtgagcgctggcgcgccgagccgccgcactgggcggcg
gcctggaaatacccggccagcgaagcgctcgcactggtcgaggcggtcgacttcagcatc
ggccgcaccgggcgcatcacaccactgctgcgcctgcagccagtcaagctcgatgaccgt
accatccgcgtggtcagcgctggctcgctggagcgttggcggcaactggacattcgcccg
ggcgatcaggtcgccatccgcctggccgggcaaaccattcccaaactagaaggcgtggtg
ttgcaaagcgccgagcgagctgcgcttgagatcccccatgaggatgactaccacgccctg
agctgcctgcgcgcctcatcggcatgcatcagccagttccacgcccgccttacctggctc
agcggcaaacaggcactgaacctgtcaggcatcggcgccggtacctggcagaaactgctt
gcggcgcagcatctcgagggcttgctcgactggctgcatctcgatgaggtgcagttgctc
gccgtgcccggcattggcccacaaggtgctacggcgctcaatcagcgcttcgccgaagcg
cggcagcggccctttcatgactggttgcgggcgctgggcgcgccggtcaatccggataac
ctgagggccgaaagctggatggagatgcagcagcgcagcgccagcgactggcagacgcta
cccggcatcggcccgactcgcgcggcccagctgcaggcgttcttccagcacgaggaaatg
ctcgcgctcgccgatcagctgggcagagccggcgtggccggcttccagctcagatag
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integrated database retrieval system
