KEGG   Pseudomonas fulva: Psefu_2075Help
Entry
Psefu_2075        CDS       T01501                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pfv  Pseudomonas fulva
Pathway
pfv03030  DNA replication
pfv03410  Base excision repair
pfv03420  Nucleotide excision repair
pfv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Psefu_2075
   03410 Base excision repair
    Psefu_2075
   03420 Nucleotide excision repair
    Psefu_2075
   03430 Mismatch repair
    Psefu_2075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfv03032]
    Psefu_2075
   03400 DNA repair and recombination proteins [BR:pfv03400]
    Psefu_2075
Enzymes [BR:pfv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Psefu_2075
    6.5.1.6  DNA ligase (ATP or NAD+)
     Psefu_2075
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Psefu_2075
DNA replication proteins [BR:pfv03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Psefu_2075
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Psefu_2075
DNA repair and recombination proteins [BR:pfv03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Psefu_2075
   NER (nucleotide excision repair)
    Other NER factors
     Psefu_2075
   MMR (mismatch exicision repair)
    Other MMR factors
     Psefu_2075
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEF22046
UniProt: F6A9X4
LinkDB All DBs
Position
2217049..2218788
Genome map
AA seq 579 aa AA seqDB search
MIAFAQLYARLDATTSSNAKLAALQDYLRDAEPADAAWAVYFLAGGRPRQLVPSRQLREL
AMQRAGLSDWLFEESYSAVGDLAETIALLLPEATSTSEDGLAVWVEQKLLPLRGLPPDEL
AMRLDALWAQLDRQSLMVSIKLITGAFRVGVSKLLVTRALAAIAEVDAKRVAQRLVGYTD
LSNRPTAASYERLIAAESEDEHAQRGGQPYPFFLAHPLQRPLEEFDASLGSPGDWLIEWK
WDGIRAQLVKRDGQLWVWSRGEELISERFPELQELAPLLPDGTVIDGELVVWRHAPEATA
RQGELMAAAADEPAERLNDQVEEQLERFGIQPFALLQQRIGRKTLSRKLLEEVPVAVLAY
DLLEWQGEDWRSHPQHQRRAQMEQVVARCASPRLMPSPLLHGDTWQALAEQREASRSLGV
EGMMLKARESAYGVGRSKDVGVWWKWKIDPLSVDAVLIYAQRGHGRRASLYSDYTFAVWD
GAPGDPERRLVPFAKAYSGLTDEEMRKVDAIVRKTTVEKFGPVRSVTPSLVFELGFEGIA
RSPRHKSGIAVRFPRMLRWRHDKGVEEADTLELLQELLP
NT seq 1740 nt NT seq  +upstreamnt  +downstreamnt
atgatcgccttcgcgcagctgtatgcgcgcctcgatgccactacctcgagcaacgccaag
ctcgctgccctgcaggattacctgcgcgatgccgagccggccgatgccgcctgggccgtg
tactttctggccggtgggcggcctcggcaactggtgccttcgcggcaactgcgcgaactg
gcgatgcagcgcgccggcttgtccgactggttgttcgaggaaagctattcggcagtgggc
gacctggcggaaaccatcgcactgttgttacccgaggccacctcgacctccgaagatggc
ctggcggtgtgggtcgagcagaagctgctgccgttgcgcggcctgccgcccgatgaactg
gcgatgcgcctagacgccctgtgggcgcagctcgaccggcaatcgctgatggtcagcatc
aagctgatcaccggcgcgttccgagtcggggtttccaagctcttggtcacccgcgctctg
gcggccatcgccgaggtcgatgccaagcgcgtcgcccagcgcctggtcggctataccgac
ctgtcgaaccggcccacggcggcgtcctacgaacggcttatcgccgctgaatccgaagac
gagcacgcccagcgcggcggccagccctatccgttctttctcgcccatccgctacagcgc
ccgctcgaggaattcgacgccagcctgggctcgcccggcgactggctgatcgagtggaag
tgggacggcattcgcgcgcaactggtcaagcgcgacggccagctgtgggtctggtcgcgg
ggcgaggaattgatcagcgagcgctttcccgaactgcaggagttggcgccgctgctgccc
gacggcacggtgatcgatggcgagctggtggtctggcggcacgcgccggaagcgaccgcc
aggcagggcgaattgatggccgcggcggcggacgagcctgccgagcgcctcaacgatcag
gtcgaggagcagctagaacgcttcggcattcagccgttcgccttgctgcagcagcgcatc
ggccgcaagaccctcagccgcaagttgctcgaggaagtgccggtggcggtgctcgcatac
gacctgctggagtggcagggcgaggactggcgcagccacccgcagcatcagcgccgtgcg
cagatggagcaggtggtggccaggtgtgccagcccccgactgatgccgtcgccgctgctg
cacggcgacacctggcaggcgctggccgagcagcgcgaagcctcacgctcgctgggcgtc
gagggcatgatgctcaaggcccgtgagtcggcctatggcgtggggcgcagcaaggacgtc
ggcgtgtggtggaagtggaagatcgacccgttgagcgtcgacgccgtactgatctacgcc
cagcgcggccatggccggcgcgccagtttgtacagcgattacaccttcgccgtgtgggac
ggtgcgccgggcgatcccgaacggcgcctggtgcccttcgccaaggcctattcggggctc
accgacgaggagatgcgcaaggtcgatgccatcgtgcgcaagaccacggtggagaaattc
ggcccggtgcgcagcgtcacccccagcctggtattcgagctgggcttcgaaggcatcgcc
cgttcgccccggcacaaaagcggcatcgccgtgcgctttccgcgcatgctgcgctggcgt
catgacaaaggcgtggaggaggccgataccctggagctgctgcaggaattgctgccatga

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