KEGG   Pseudomonas fluorescens PCL1751: PF1751_v1c25520Help
Entry
PF1751_v1c25520   CDS       T03766                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfw  Pseudomonas fluorescens PCL1751
Pathway
pfw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PF1751_v1c25520 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfw03400]
    PF1751_v1c25520 (ligD)
Enzymes [BR:pfw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PF1751_v1c25520 (ligD)
DNA repair and recombination proteins [BR:pfw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PF1751_v1c25520 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJP52252
LinkDB All DBs
Position
complement(2861792..2864251)
Genome map
AA seq 819 aa AA seqDB search
MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN
SVLSDASVGKPKTRAKARKTALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAG
EVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNALDIGRS
LDIVYYLFDAPFLNGEDQRQAPVEERRAALKEALAGSRSTLLRYSEAFTAHHRDIFESAC
DLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNND
TGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQF
AEWTREGVVRQAAFVGLRTDKPVAQVVHEQPRTVHSRKPVKKTSRDVNITHPDRVIDKHS
GTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQS
LDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAML
EAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKAIAQFMTEQLPER
FTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWT
VANVLQRLNALKADPWAGYANRQKISKKMWDKLGAHPPE
NT seq 2460 nt NT seq  +upstreamnt  +downstreamnt
atgtccaagcccttgagcgaatacaaccgcaaacgtgatttcgggataaccgccgaaccg
gcaggcagtgcgccagcaggcaaacgcaaagcctcggcgctgtcgtttgtgattcaaaag
catgacgcacgcaacctgcactatgacttccgcctggagctcgacggcgtactgctcagt
tgggccgtccccaaaggcccgagcctggatcccagccacaagcgcctggccgtccacgtc
gaagatcatcccctgagctatggcggctttgaaggcagcattccagcgggtcagtacggt
gcaggcgatgtcatcgtgtgggaccgcggcatctggcagccccacgatgagccccgcaag
gcctacgcagccggcaagctcaaattcaccctggtcggcgagaagctctccggtgactgg
gcgctggtgcgcacgcgcttgaagggcagcggcgacaaggaacaatggctgctgatcaag
gaaaaggacccacaggcgcgctcggccgacgactacgatatcgtccaggcccagccgaac
agcgtgctcagcgatgcctcagtgggcaaacccaagacgcgggccaaggccaggaaaacc
gccctccccgagcaattcaccccacaattggccacactggtggatcgtgcacccgagggc
gattggcaatacgaaatcaagttcgacggttaccgcatgctcgcacgtatccaagcgggt
gaagtgcgcctgttcacccgcaacgggcacgactggaccgagcgtctgccgcgtcaggtc
aaggccttgcaggcactgaagctcaaggacagctggctggatggtgaggtggtcagcctc
aatggcgacggcctgccggactttcaggcgctgcaaaatgccttagatatcggccgcagc
ctggacattgtctactacttgtttgacgcgccctttctcaatggcgaggaccaacgccag
gcgccggtcgaggaacgccgcgccgccctaaaggaggctctggccggtagccgcagcaca
ttgctgcgctattccgaagcgtttaccgcgcaccaccgggacatctttgaaagcgcctgc
gacttggccctcgaaggcgtgatcggtaagcgcctgggcagcccgtacgtttcccgtcga
agtgccgactggatcaaactcaaatgccggctgtcccaggaattcgtgatcgtcggttac
acccggccacagggttcacgcagtggcttcggcgcgctgttgctggcggtgaataacgac
acgggcctggtgtacgcgggccgtgtgggaacgggtttcgatcaggcggcgctgaaagcc
atttacgcgcagctcacaccgctggagtgcgagacgtcacccctggcgaagccactgtcc
agcgcccaagcgcgtggtgtgcattgggtcaaaccgacgttggtcgcgcaggtgcagttt
gccgagtggacacgcgaaggcgtggtccgccaggcagcgtttgtcgggctgcgcaccgac
aagccggtggcgcaggttgttcatgagcaaccacgcacggtccactcaaggaagccggtg
aaaaaaaccagtcgcgatgtgaacatcacccacccagaccgtgtgatcgataaacacagc
ggcacacaaaaacagcaactcgcgcaattctacgacaccatcagccaatggattctgccc
ttcctgcgccatcgtcctgtctcactgctgagagcgcccgagggtatcgaaggcgagcaa
ttcttccagaaacactcggagcgcctggccattcccaacatcaagcaattggatcagtct
ctcgatcctggccatgcacgcctgatggaaatcgacaacgtcggcgcattgatcggcgca
gtacaaatgggcagcgtggagtttcacacctggggcgccacctcggacaagatcgaaacc
ccggacctgtttgtgctcgatctcgacccggacccggcactgccctggaaagccatgctg
gaggccgcgcaactcaccctgtcggttttggatgagctggggttgcaagccttcgtcaaa
accagcggcggcaagggcctgcacctgatcgtgccgttggcgcgccgagacaattgggag
accgtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcagttgcccgaacgt
tttaccgcgacatcgggccccaaaaaccgggtcggcaagatctttatcgattacctgcgc
aatgcccgcggtgccagcaccgtagcggcgtattccgtgcgcgcacggcctggcttgcca
gtgtcggtaccggtcagccgcgaggagttggaggggttacgcggtgcgcaacaatggacc
gtcgccaatgtgctgcagcgcttgaacgctttgaaagcggacccctgggcggggtatgcc
aatcgccagaagatcagcaagaagatgtgggacaaactgggcgcccatccaccggaatga

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