KEGG   Pseudomonas lurida: A7318_14040Help
Entry
A7318_14040       CDS       T04730                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfx  Pseudomonas lurida
Pathway
pfx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7318_14040 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfx03400]
    A7318_14040 (ligD)
Enzymes [BR:pfx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A7318_14040 (ligD)
DNA repair and recombination proteins [BR:pfx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7318_14040 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOE79673
LinkDB All DBs
Position
3149238..3151727
Genome map
AA seq 829 aa AA seqDB search
MAKPLSEYNRKRDFSITGEPAGSAPAAKRQASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPAQKRLAVHVEDHPLSYGSFEGSIPTGQYGAGDVIVWDRGVWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDSQARPADDYDIVQAEPN
SVVSDASVGKPRAQPKAKAKAKAKPQKATPPLPEDFSPQLATLVDRAPEGDWQYEIKFDG
YRMLARIRDGEVRLFTRNGHDWTDRLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQA
LQNAFDIGRSLDIVYYLFDAPFLNGQDRRQAPVEDRRAALKAALAGSRSKLLRFSEAFTA
HPRDIIESACDLALEGVIGKRLGSPYASSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGF
GALLLAVNDDSGLVYAGRVGTGFDQASLKTIYTQLTPLERKVSPLEKPLTSAQARGVHWV
EPTLVGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKPTKKTGAGVNIT
HPDRVIDTQSGTQKQQLAQFYDSISQWILPFLSHRPVALLRAPEGIEGEQFFQKHSERLA
IPNIKQLDQALDPGHARLMEIDSVGALIGAVQMGTVEFHTWGSTKDKIETPDLFVLDLDP
DPALPWKAMLEAVQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDSWDTVKAFAKAIA
QFMTAQLPERFTATSGPRNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREEL
KGLRSAQQWTVANLAQRVRGLKADPWAGYANRQKISKKMWDKLGAHPPE
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggcaaagcccctgagcgagtacaaccgcaagcgcgacttcagcatcactggcgagccg
gcaggcagcgcgcctgctgccaaacgccaggcgtcagcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcattatgactttcgcctggagctcgacggcgtgttgctcagt
tgggcagtgcccaagggcccaagccttgaccctgcgcaaaagcgcttggccgtccacgtg
gaagaccaccctctcagttatggcagcttcgaaggcagtattcccaccggccaatacggc
gcaggcgatgtcatcgtgtgggaccgtggcgtgtggcaaccccacgacgatccgcacaag
gcctacgccgctggcaagctcaagttcaccctggtcggcgagaaactttccggcgactgg
gcgctggtgcgcacgcgcctgaagggcagcggcgataaagaacaatggctgttgatcaag
gagaaggactcccaggcacgcccggccgatgactacgatatcgtccaggccgaaccgaat
agcgtggtcagtgacgcttcggtcggcaagccccgtgcccagccaaaggccaaagccaaa
gccaaagccaagccgcaaaaagcgacgccccccctcccagaagacttcagcccgcaactg
gccacgctggtggaccgcgcaccggagggcgactggcaatacgaaatcaagttcgacggc
tatcgcatgctcgcacgcattcgagacggcgaagtgcgtctgttcacccgcaacggccac
gactggaccgatcgactaccgcgtcaggccaaggccctgcaggccctcaagctcaaggac
agttggctcgacggcgaggtggtcagcctcaacggcgacggcctgccggatttccaggcg
ttgcaaaatgcctttgatatcggccgcagcctggacattgtctattacctgttcgatgcg
ccgtttctcaatggccaggatcgacgccaggcgcccgtcgaggatcgccgtgctgcactc
aaggccgcgttggccggcagcaggagcaaactattgcgtttctcggaagccttcaccgcc
caccctcgcgacatcattgaaagtgcctgtgacctggcgctggagggtgtgatcggcaag
cgcttgggcagcccgtatgcgtccagtcgcagcgcggactggatcaagctcaaatgccgt
ttgcgccaggaattcgtgattgtcggctacacccggccacagggttcgcgcagcggtttc
ggggcgctgttactggccgtgaatgacgactccgggctggtgtacgccgggcgtgtgggc
accggcttcgatcaggcgtcactgaaaacgatctacacgcaactcacgccactggaacgc
aaggtatcacctctggaaaaacccctgaccagtgcgcaagcccgcggcgtgcactgggtg
gagccgacgttggttggcgaggtgcagtttgccgaatggacccgtgaaggcgtggtccgc
caagcggcgtttgtcggaatgcgtacggacaaacccgccgcgcagatcattcatgagcaa
ccgcgaacggccaaatccatgaagcccacgaaaaaaaccggcgcaggggtgaatatcacc
cacccagaccgcgtgatcgacacacaaagcggcacgcaaaaacaacaactggcgcagttc
tacgacagcatcagccagtggatcctgcccttcctaagccatcgcccggttgctctactg
agggcgccggaaggcatcgagggcgagcagttcttccagaaacactccgaacgtctcgct
attcccaacatcaagcaactggatcaggccctcgacccgggccatgcgcgcctgatggaa
atcgacagcgttggcgcgttgatcggcgcagtgcagatgggcaccgtagagtttcacacc
tggggctcgactaaggacaaaatcgagacccccgacctgtttgtgctcgatctcgacccg
gacccggcgctgccttggaaagccatgctcgaagcggtgcagttgaccctctcggtgctg
gacgagttggggctgcaagcgttcgtcaagaccagcggtggcaaaggcttgcacctggtc
gtgccgctggcgcgccgggacagttgggacaccgtcaaggcattcgccaaggccatcgcg
cagttcatgacggcgcaactgcccgagcggtttaccgcgacgtcggggcccaggaatcgg
gtcggcaagatctttatcgactacctgcgcaatgcacgcggggccagtaccgtcgccgcg
tactccgtgcgggcacgcccgggtctaccggtgtcggtgccgatcagccgcgaggaattg
aaaggattacgcagtgcccagcaatggacggtcgccaacctggcgcaacgcgtcaggggc
ttgaaggccgatccctgggcgggttatgccaaccgacagaagatcagcaagaagatgtgg
gacaaactgggcgcccatccacccgagtga

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